Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02277 ATGTCGTTTAGGAGTATCATCCTGGAAAGGAAGGGATTTGAGGTGAAGTTTGGGTATAGCATGAGATCCAGGTCACAGTCACACAGTGATGCTATTGCCCAGGATAGTTTGGTGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTCATGAGAATTGAGGCCTCTGAGGATTCCTGGCCTGCCCGGAAACATGTCGTTGCCTGCGCCGCAGTTTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCCCCTCAAGTGTCCGGCAAGTTGAACATTCCCAATCTCCTTGAAGCAGCCTGGTCCAAGGGACTCTCTTCTTCAGTGTTATATTAA 372 0.4892 MSFRSIILERKGFEVKFGYSMRSRSQSHSDAIAQDSLVVLDGLKQSCWANMPPELLRDVLMRIEASEDSWPARKHVVACAAVCRSWREIMKEIVKSPQVSGKLNIPNLLEAAWSKGLSSSVLY 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02277 123 CDD F-box_AtTLP-like 48 92 - -
Pumo3g02277 123 Gene3D - 41 97 - -
Pumo3g02277 123 PANTHER TUBBY-RELATED 27 110 - -
Pumo3g02277 123 Pfam F-box domain 48 94 IPR001810 GO:0005515
Pumo3g02277 123 SUPERFAMILY F-box domain 42 90 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02277 Pumo-Chr3 34851624 34853422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02277 1 116 TUB Transcription Factor Family AT2G47900 56.800 8.09e-43 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02277 K19600 - gmx:100809257 206.838