Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02276 ATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGAGTGGCCCCAACACAGACTCAATTTCTTCATAGCCGAATTGATACTTCTCCATCCATCCCTTTCTTTAGATCAAAATCAACCCGCATGGACAATCTCCCATCAGTACCTTTGACTTGTCAAAATGAGGGGATGCTGGTATTACGAAACAAGTCCCCAAGGTGGCATGAACAACTTCAATGCTGGTGTCTGAACTTCAACGGGCGAGTGACAGTTGCTTCAGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAAAAATGGAGTTTCTGAGCAGGCTCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCAACATGGATTATCAGTATCCAATCTCTGCCTTTGAAGCATTTGCAATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGA 459 0.4314 MQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLPSVPLTCQNEGMLVLRNKSPRWHEQLQCWCLNFNGRVTVASVKNFQLVASPKNGVSEQAQENVILQFGKVGKDVFNMDYQYPISAFEAFAICLSSFDTKIACE 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02276 152 ProSitePatterns Tub family signature 2. 137 152 IPR018066 -
Pumo3g02276 152 Pfam Tub family 1 147 IPR000007 -
Pumo3g02276 152 SUPERFAMILY Tubby C-terminal domain-like 1 152 IPR025659 -
Pumo3g02276 152 Gene3D Tubby Protein; Chain A 1 152 IPR025659 -
Pumo3g02276 152 PRINTS Tubby superfamily signature 109 128 IPR000007 -
Pumo3g02276 152 PRINTS Tubby superfamily signature 130 152 IPR000007 -
Pumo3g02276 152 PRINTS Tubby superfamily signature 82 98 IPR000007 -
Pumo3g02276 152 PRINTS Tubby superfamily signature 64 81 IPR000007 -
Pumo3g02276 152 PANTHER TUBBY-RELATED 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02276 Pumo-Chr3 34849776 34851002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02276 1 152 TUB Transcription Factor Family AT2G47900 77.778 2.08e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pumo3g02276 Tub 4.6e-54 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02276 K19600 - gmx:100809257 305.064