Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02275 ATGGCGAACAAATTCCACTATGTTGCGGAGATTACTCCCGAGAAGCAAAACTGGAAAAGCATGGTGAGAGTCATATGGCTATGGGTGGTGAAAGACTTGGGAAAGTCAAAGATACCTTTCTCAATGGAATTGTTGCTAGTGGATTCAAAGGGAGTTCGAATCCACGCTTCTCTGAGAAAGACTGTCATTTACAAATTTCAGAAAAGTTTACGAGAAGGCAGTGTATACTCCATTCAGTCATTTGGTGTGGCTGAAAATAGTGGTACTTTTAGAACATCCACTCATAAGTACAAGATTAACTTCAATTTGAATACTAAACTAGAAGAGTTGGATAAAGCTTTGGTACCCCAAAAAAACTATGACTTTGTGGCTATTCGTAAGATTATTGGTGGTGAATGGAATGATGATTACTTAGTGGTAGATAGACGTTCACGATCAACTATTTTGAATCATGATGGTTGTTTTACTGAATCAACTTCTGCACAATCAACATCATCATCATCAAGAAATTCAAAGATCCCTGTTGTTACAGATATGGGTTTGGATGAAAAAATGATGGACGATGACAACGTCAATTCACATGAAGATGTGTAA 594 0.3737 MANKFHYVAEITPEKQNWKSMVRVIWLWVVKDLGKSKIPFSMELLLVDSKGVRIHASLRKTVIYKFQKSLREGSVYSIQSFGVAENSGTFRTSTHKYKINFNLNTKLEELDKALVPQKNYDFVAIRKIIGGEWNDDYLVVDRRSRSTILNHDGCFTESTSAQSTSSSSRNSKIPVVTDMGLDEKMMDDDNVNSHEDV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02275 197 CDD RPA1_DBD_A_like 22 106 - -
Pumo3g02275 197 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Pumo3g02275 197 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Pumo3g02275 197 Gene3D - 5 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02275 Pumo-Chr3 34844136 34845589 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02275 1 128 Core DNA Replication Machinery Family AT5G08020 24.060 2.88e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02275 - - tpra:123905297 145.591