Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02272 ATGAGTGGTTCTCCAAATTCAAAACAGAGCACATGCGACTATTGTGGGGACTTCACGGCTCTTCTGTATTGCAGAGCCGATTCTGCGAAGCTGTGTTTGTTCTGTGACCGCAAAGTTCACTTCCCAAACCAGCTTTTCTCCAAGCACGCGCGCGCGCAGCTCTGTGACGCGTGTGGCGATTCCCCTGCCTCCGTGCTCTGTTCTGCTGAGAACTCTGTTCTGTGCCCCAACTGTGATTGCGAAAGGCACGAACTTTCGGTGTCTCAGGTGCACCAACGGAGGCCCCTCGAGGGGTTCTCGGGGTGCCCTTCTGTGACTGACTTGTTAACGATTTTGGGTCTCGGTGAAAAATCTCTGCTTCCAAATGAAGGAACTTCCCATGTTGATGGCCTCTCGGATTTGCACGTGTGGAGTGCTCCTTCTGCTGTTGGTCTTGAAGATTTGATCACTTCCACAGCTTCTTCTCATAAGAATCGTAAGGGTGCGTGCGGGAGACAGAAAGAAGAAATTCTTAGTCAGCTCCGTGAGCTAGTAAAGTTGGAGCCCAACTTGATTCATGGAGAAGTTGATGCTGAACGACAAGTGCAATTTGGAAATTTGTCCACTGGTTTTGAACGTGACGTGGAGGCTAATATGTTTCCTTCTTACGAGGCAGGTGTGTTTTGTTGGCATGGAGAAAGCAGTGATCCTACAAATCAAATTGTTCCTTCGGATACGTCGTCGTTGAGAGATTATGGCGAGGTAGTTTCAGCTAATGATGGAAGTTTTACCATCCCTGGGGCTCACGCCAATTTTAACAACCAAGGGAAACCATCAAATTCTTTTAGCGCTGAAAACTTATCTCCTACTCCTAAAGCTACTCCATATGAGTTGACAACAAGTCATGAAAGAGATTCAGCATTATTGCGATACAGAGAGAAGAAGAAAACCAGAAGATATGACAAGCACATCAGATACGAATCACGAAAAGTTCGGGCAGAAAGCAGGATGAGAATTAAGGGTCGGTTTGTCAAAGATGAAACACAAAAATAA 1032 0.4651 MSGSPNSKQSTCDYCGDFTALLYCRADSAKLCLFCDRKVHFPNQLFSKHARAQLCDACGDSPASVLCSAENSVLCPNCDCERHELSVSQVHQRRPLEGFSGCPSVTDLLTILGLGEKSLLPNEGTSHVDGLSDLHVWSAPSAVGLEDLITSTASSHKNRKGACGRQKEEILSQLRELVKLEPNLIHGEVDAERQVQFGNLSTGFERDVEANMFPSYEAGVFCWHGESSDPTNQIVPSDTSSLRDYGEVVSANDGSFTIPGAHANFNNQGKPSNSFSAENLSPTPKATPYELTTSHERDSALLRYREKKKTRRYDKHIRYESRKVRAESRMRIKGRFVKDETQK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02272 343 SMART bboxneu5 7 54 IPR000315 GO:0008270
Pumo3g02272 343 SMART bboxneu5 55 96 IPR000315 GO:0008270
Pumo3g02272 343 MobiDBLite consensus disorder prediction 261 294 - -
Pumo3g02272 343 ProSiteProfiles Zinc finger B-box type profile. 50 96 IPR000315 GO:0008270
Pumo3g02272 343 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 11 339 - -
Pumo3g02272 343 ProSiteProfiles Zinc finger B-box type profile. 7 54 IPR000315 GO:0008270
Pumo3g02272 343 ProSiteProfiles CCT domain profile. 297 339 IPR010402 GO:0005515
Pumo3g02272 343 CDD Bbox1_BBX-like 12 54 - -
Pumo3g02272 343 Pfam CCT motif 297 339 IPR010402 GO:0005515
Pumo3g02272 343 MobiDBLite consensus disorder prediction 261 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02272 Pumo-Chr3 34801858 34805325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02272 12 312 C2C2-CO-like Transcription Factor Family AT2G47890 38.217 5.30e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pumo3g02272 CCT 2.8e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02272 - - gmx:100798117 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02272 3 34801858 34805325 Pumo3g02272 3 34801858 34805325 ECH
Pumo5g03349 5 82629019 82633486 Pumo3g02272 3 34801858 34805325 PCT