Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02266 ATGACTCTTCTTTTTGCTTTTCTTCTCTCTCATGCAAATGACAGGGTTAAACCACGCCTTTTATTTAAACAGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTGTAACTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCTCGAGCTTGAGAGTGGCCAGGCCTCCTATATTGCCTGGTTCATATGTACAAGGGGCCTATGCTCCTGTACTTCTTTCCCCAGGGGTTGTCCAATATCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCTATCTCCTGGTGCTCAACCTGCTGTTGGGGCCACTTCTTTATACGGAGTGACTCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCGCTGTCCTCTACTATTGGCCATTCAGGAAGCAGCCTGAAGGATCAATTATTTCCTGAAAGACCCGGTGAACCTGAATGCCAATACTATCTGAAAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCCCGGGACCATATTGTGGCACGGCCACTTCTTAGCCCCATTGGACTTCCTTTACGTCCGGGGGTAGAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTTGGCTGCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACACACCATCGGTATCTTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGGTCGTTGCTGTCTCAGCTGGCTCCTTCAACAACATCTTCAGAGCTTCGGCTTGAACTGATGTCAGGGTCCAAAAAAGAATCCCTTTCAGCCAGAATACCTTCTTCTGGAAATAGTTCTGGTACTTCTGTTGGTCTAATTTTTTCACAAGGTGGGTCTGTCTCGCTATCCGATGTACAACTCTCAAGTCAGAGTTCTGCCCCTCTAAGCAGTAGCAGAAGCACCAGACAAAGCGGTGAGATACGTTGA 1068 0.4644 MTLLFAFLLSHANDRVKPRLLFKQGEKECSYYLKTGQCKFGVTCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASSSLRVARPPILPGSYVQGAYAPVLLSPGVVQYPGWSHYSAPVSPVLSPGAQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTIGHSGSSLKDQLFPERPGEPECQYYLKTGDCKFGLACRYHHPRDHIVARPLLSPIGLPLRPGVEPCAFYLQNGHCKFGCTCKFDHPLGSMRYTPSVSSLIDVPVTPYPVGSLLSQLAPSTTSSELRLELMSGSKKESLSARIPSSGNSSGTSVGLIFSQGGSVSLSDVQLSSQSSAPLSSSRSTRQSGEIR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02266 355 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Pumo3g02266 355 SUPERFAMILY CCCH zinc finger 25 51 IPR036855 GO:0046872
Pumo3g02266 355 PANTHER PROTEIN PHOSPHATASE RELATED 23 282 - -
Pumo3g02266 355 SUPERFAMILY CCCH zinc finger 185 208 IPR036855 GO:0046872
Pumo3g02266 355 MobiDBLite consensus disorder prediction 332 355 - -
Pumo3g02266 355 SUPERFAMILY CCCH zinc finger 226 255 IPR036855 GO:0046872
Pumo3g02266 355 ProSiteProfiles Zinc finger C3H1-type profile. 23 51 IPR000571 GO:0046872
Pumo3g02266 355 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Pumo3g02266 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Pumo3g02266 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 226 250 IPR000571 GO:0046872
Pumo3g02266 355 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 25 50 IPR000571 GO:0046872
Pumo3g02266 355 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Pumo3g02266 355 SMART c3hfinal6 23 50 IPR000571 GO:0046872
Pumo3g02266 355 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Pumo3g02266 355 Gene3D - 9 61 - -
Pumo3g02266 355 Gene3D - 178 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02266 Pumo-Chr3 34676433 34679394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02266 22 319 C2H2 Transcription Factor Family AT5G18550 46.645 1.62e-73 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo3g02266 zf-CCCH 8.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02266 - - gmx:100812475 598.201