Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02264 ATGTCAAATATTTCAGGTGATGAAGGAAGTTTCTCCTCAGCAAACACTGGGGAAGAAGTTCATCAAGAAAACAAGCAGCAACAACCACTAAACCACCCCCATGGCTCAAGTTCTGGTGCTTGCAACAGCAATGGCTCCACTAATCAACAGCAACAGCAAGCAGCCAAGAAGAAAAGAAACCTACCTGGAAACCCAGATCCGAATGCTGAAGTAATTGCCTTATCACCAACCACATTAATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCATCGCAGAGGTCACAATCTTCCATGGAAACTGAGGCAAAGAGCAAGCAATGAGGTGAAGAAAAGGGTTTATGTGTGTCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTAGGAGACCTCACTGGCATAAAAAAACATTACAGCAGAAAACATGGTGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTCCAGTCTGATTGGAAGGCCCACCAGAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTTCCAGAAGGGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACTGAAGAAAACAACCGAGTATACCACTCATTAACGAGTGGCACCTTGCAAAATGAATTGCCGGACCTTATGGCCACCACAATGCCTCTAAGCACTAGTTCCAACAACAGTGAACCCGAATTGAACAACAACTACGACCCTAGTAAGAGCCCACTCAAACCCCTCTCCCAAGAACAACTTGTCCCAATGCAATTCAAGTCCACAAGCATGGGTGGTGGCATGTTCTCCACCACCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCTCATCCCTCTAATTCTTCCACCCTTCAACTCAGCTCCAACAACTCCACTGCTTTCAATTACTTCCAAGACAGCAAAAACGCTTCTGCCTCAGCTCACATGTCTGCCACGGCTTTATTGCAGAAAGCAGCACAAATGGGTGCCACTGCAAGCAATAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTCGTTAGTCATGGCATGCCTGGTCCTGACCATCACAACCATAATTCTTCTTCTTCTTCCTATGATCCCTTCCATCATCATCCACACCCTAATCATTCTCACATGGCTGGGATTAGTGGCGCTGGAGCCTTCACCAACCAATTTTTTCACAAGGGGCAACATGAAATGTCACTGATGTTTGATTCCAACACCAATGATATGGGAATGTTCGGTCCAATGTTCATGGGAAGTGACCACAACCAAGGCTTGATGAAGAACGTGGAGCATGAGATTGGTACTAGTTCGAGTTTGGTTCATGACTTCTTGGGCGTTGGTGCAACTTCAAGGGTGCATGAACCGCAGAAACAACAACAGCAAAGGTTGGAGTTAGAAGCATTAACCCACCAGAGGTTGCAAATTATGAACCACTTTCACCACCACCACCTTCCACATGGGGATTCTGCTATGGAGAAAACCATTTGGGACATTTGA 1566 0.4534 MSNISGDEGSFSSANTGEEVHQENKQQQPLNHPHGSSSGACNSNGSTNQQQQQAAKKKRNLPGNPDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRASNEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVYHSLTSGTLQNELPDLMATTMPLSTSSNNSEPELNNNYDPSKSPLKPLSQEQLVPMQFKSTSMGGGMFSTTTSGTLFGGPKNMSHPSNSSTLQLSSNNSTAFNYFQDSKNASASAHMSATALLQKAAQMGATASNNSINSPMMQKSFVSHGMPGPDHHNHNSSSSSYDPFHHHPHPNHSHMAGISGAGAFTNQFFHKGQHEMSLMFDSNTNDMGMFGPMFMGSDHNQGLMKNVEHEIGTSSSLVHDFLGVGATSRVHEPQKQQQQRLELEALTHQRLQIMNHFHHHHLPHGDSAMEKTIWDI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02264 521 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
Pumo3g02264 521 MobiDBLite consensus disorder prediction 375 389 - -
Pumo3g02264 521 Gene3D Classic Zinc Finger 140 219 - -
Pumo3g02264 521 FunFam protein indeterminate-domain 12-like 64 132 - -
Pumo3g02264 521 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Pumo3g02264 521 SMART c2h2final6 126 156 IPR013087 -
Pumo3g02264 521 SMART c2h2final6 85 107 IPR013087 -
Pumo3g02264 521 SMART c2h2final6 161 181 IPR013087 -
Pumo3g02264 521 MobiDBLite consensus disorder prediction 242 266 - -
Pumo3g02264 521 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Pumo3g02264 521 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 484 IPR031140 -
Pumo3g02264 521 MobiDBLite consensus disorder prediction 1 58 - -
Pumo3g02264 521 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Pumo3g02264 521 MobiDBLite consensus disorder prediction 1 70 - -
Pumo3g02264 521 Gene3D Classic Zinc Finger 63 131 - -
Pumo3g02264 521 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Pumo3g02264 521 MobiDBLite consensus disorder prediction 371 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02264 Pumo-Chr3 34615942 34621103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02264 35 357 IDZ Gene Family AT3G50700 52.722 5.60e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g02264 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02264 - - gmx:100797943 790.801