Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02263 ATGGGTGACAACAACGTAGGCAAAGTCTTAGAGAGAGAAGGCTTTAAGTACAACTTCACAGCTTCAACGGCAACTGCAAGTGACACCTCTGCACATGATGGGGTCATTAAAGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCCAACGCCAAGATCTCAAAGGAAGCTAAAGAAACCATGCAAGAATGTGTGTCCGAGTTCGTTAGCTTTGTCACTGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTGAATGGTGATGATATTTGCTGGGCCCTGGCTACCCTAGGGTTTGATGACTACGCTGAGCCACTTAAAAGGTACTTGCATAAGTATAGGGAGTTGGAGGGGGAGAGAGCAAATCAAAATAAGGGTAGCAATAGATATGAAAACAACATTGCAAACATATAA 450 0.4511 MGDNNVGKVLEREGFKYNFTASTATASDTSAHDGVIKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHKYRELEGERANQNKGSNRYENNIANI 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02263 149 Coils Coil 125 145 - -
Pumo3g02263 149 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pumo3g02263 149 Gene3D Histone, subunit A 31 147 IPR009072 GO:0046982
Pumo3g02263 149 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Pumo3g02263 149 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Pumo3g02263 149 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pumo3g02263 149 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Pumo3g02263 149 FunFam Nuclear transcription factor Y subunit B-3 31 148 - -
Pumo3g02263 149 SUPERFAMILY Histone-fold 39 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02263 Pumo-Chr3 34598510 34599778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02263 17 136 CCAAT-HAP3 Transcription Factor Family AT2G47810 68.657 1.12e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo3g02263 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02263 K08065 - gmx:100817274 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02263 3 34598510 34599778 Pumo3g02263 3 34598510 34599778 ECH