Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02257 ATGGTCGAAACCAGACGCGGCGCCTCTTCTTCCAAGCGTTCTCTCTCTTCGCCTTCTGCTGCGCCCAACACCAAACGATCCAAGGTGTCCAAGGATTCCTCTGTGGCTCCGGTCAACGAATCTGGGGAACCGGAGCTACGGCCATCTGATCTGCCAGATACGGCGTCGTTGAAGGCCGTGGATGTTTCTGACGCGGTGTTACCCGATAAGTCTCCTTCTGAAGGCGAGGATTTGGTGCCTCCACAGTGTGTAGGTGAAACTGCGGAGAAATCGAAGGTGGCTGGTGTCCCCCCGAGAAGCGTGAAGAAACGTCCTGCGAAATCGTGCCCCAAGACTGCGTGGGGAAAGCTCCTCTCTCAGTGTTCTCAGAATCCTCACGTGTGCATGAGTGAACCTATCTTCACTGTTGGTCAAGGTCGACGTTGTAATTTATGGCTTAAAGATCCCACCATTGGTAGTGTTTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGTTCATCGGGTGCATTACTGGAAATCACAGGGGGCAAAGGTTCTATTCACATTAATGGGAAGACATATAGAAAGAATGCCCGTCTGATTTTAAGTGGAGGTGATGAGGTTGTCTTTGGTTCTTCTGCCAAGTATGCTTATATCTTTCAGCAGCTGACAAATAGTAATATTAGTACTGCTGATATACCTTCTTCTGTGAGTATTTTGGAAGCCCAGAGTGCTCCAATAAATGGAATGCAAGTTGAAGCCAGATCTGGAGACCCTTCTGCTGTTGCTGGAGCATCTATATTGGCATCTTTATCTAATAATATTCATAAAGAATTATCTCTCCTTCCACCTGCTGCTAAAACTGGCAAAAATGTGCAGCAGAACACTAACATTTCATCACTACCTTCTGGCCACGGGGATGATATCCCAGACAATGAAATGAATGATACCACCAATAATGATGAACCAGCTGGAGATTTTTCTGCTGAGAAAACTGTTCTTCCATCCTCTACCACTGTTAACGAAAATCCTAGACTTGACTCAGCGGAAGTCGATACCAATATTGGTGCAGATGTTGGGAAGATGACTGCTGCTACATATGAGTTGAGGCCATTACTGCGCATGCTTACTGGCTCATGTCCTGAATTTGATTTAAGTGGTAGTATTTCCAAGATATTCGAAGGGCGAAGGGAATTAAGAGAACTCCTTAAAGATGTTGATACCTCAACAGTATTGGCATCAACCAAGCGGCAAGCATTTAAGGACAGTTTACAACAGAGAATTCTCAAAGCTGAGAATATTGATGTCTCATTTGAAACTTTTCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGACCTCCCATCAGTGTCGCCACGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAAGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGCCTACTAATTGTTGATTCTCTTTCACTGCCTGGTGGATCACCATCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCTAGGGCTGAAAAATCATCTGTGTTTGCTAAGAGAAGTGCCCAGACTGCTATGTTACAACATAAGAAACCAGCTTCTAGTGTTAATACTGAAATTATTGGTGGATCGACACTAAGTTCTCAGGCTATGCTGAAGCAAGAGGTTTCTACTGCATCAGCAAAAGGCGCTACTCTTAAAAAGGGTGATCGAGTAAAATTTATTGGTAGCTTTCCTTCTGCTGTCTCATCATTACCAAATTGTATTTCAAGGGGACCAAGCTATGGCTCCCGGGGCAAAGTTCTCCTAGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGTGGCCTTTGCGAAGATGATCGTGGGTTCTTCTGTTCTGCAAATCATTTACTACGAGTCGACGGCTCTGGAGGGGATGATCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGCTGCCTCTAATCAGAGTAAAAGTGGTGCACTCGTGTTGTTCATTAAAGATATAGAGAAGGCAATGATTGGCAACTATGAAATTTTAAAAAGTAAATTTGAAAGCTTGCCACCGAATGTTGTGGTAATTGGTTCTCACACCCAGTTGGATAGTCGTAAAGAGAAGACTCAACCTGGCGGCCTTCTGTTTACCAAGTTTGGAAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTAGCAGACTGCATGATAGGAGCAAAGAAACCTCTAAAGTTATGAAGCAACTTAATCGCCTTTTTCCAAACAAAGTGACCATACAGTTGCCTCAGGACGAGGCATTACTTTCTGACTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCTTAGTTCTCAAGAGAATTGGATTGGATTGCCCTGACCTTGAGACTCTTTGCATCAAAGACCACACCCTAACGACTGAGAGTGTGGAGAAGATCATTGGATGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTATCAGAGATTCTAAGCTTGTAATATCTGCAGAAAGCATTAAGTATGGACATAATATTCTACAGGGCATTCAAAATGAGAACAAGAACGTGAAAAAATCACTTAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGCTGATGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTTATGCTTCCTCTTCAGAGGCCTGAATTATTTTGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCAAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAGAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGACGAGGTTGATAGTATGCTAGGGAGACGTGAAAACCCTAGTGAGCATGAGGCTATGCGAAAAATGAAAAATGAGTTTATGGTAAATTGGGATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGATTGATGGTTAATTTGCCAGATGCTCCAAACAGAGAAAAAATTCTCAGAGTCATTTTAGCGAAAGAAGATTTGGCACCTGATGTTGATTTTGAAGCAATGGCGAATATGACTGATGGATATTCTGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGTCCAATTAGAGAGATCTTGGAGAAGGAAAAGAGGGAGAGAAGCGTAGCATTGTCTGAGAAGAAACCTTTACCTGGATTGTGTGGCAGCGGCGACATTCGTTCTTTAAAGATGGATGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCAGAGTCAAACAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGAGAAGGAGGATCAAGAAAAATGAGATCTCTGAGCTATTTCATGTAA 3702 0.4241 MVETRRGASSSKRSLSSPSAAPNTKRSKVSKDSSVAPVNESGEPELRPSDLPDTASLKAVDVSDAVLPDKSPSEGEDLVPPQCVGETAEKSKVAGVPPRSVKKRPAKSCPKTAWGKLLSQCSQNPHVCMSEPIFTVGQGRRCNLWLKDPTIGSVLCKLSHIERGGSSGALLEITGGKGSIHINGKTYRKNARLILSGGDEVVFGSSAKYAYIFQQLTNSNISTADIPSSVSILEAQSAPINGMQVEARSGDPSAVAGASILASLSNNIHKELSLLPPAAKTGKNVQQNTNISSLPSGHGDDIPDNEMNDTTNNDEPAGDFSAEKTVLPSSTTVNENPRLDSAEVDTNIGADVGKMTAATYELRPLLRMLTGSCPEFDLSGSISKIFEGRRELRELLKDVDTSTVLASTKRQAFKDSLQQRILKAENIDVSFETFPYYLSDTTKNVLIASTFIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLSKALVKHFGASLLIVDSLSLPGGSPSKEVDSAKESSRAEKSSVFAKRSAQTAMLQHKKPASSVNTEIIGGSTLSSQAMLKQEVSTASAKGATLKKGDRVKFIGSFPSAVSSLPNCISRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDLDKVAINEIFEAASNQSKSGALVLFIKDIEKAMIGNYEILKSKFESLPPNVVVIGSHTQLDSRKEKTQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETSKVMKQLNRLFPNKVTIQLPQDEALLSDWKQQLDRDIETMKAQSNVVSIRLVLKRIGLDCPDLETLCIKDHTLTTESVEKIIGWAISYHFMHSSEASIRDSKLVISAESIKYGHNILQGIQNENKNVKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPSEHEAMRKMKNEFMVNWDGLRTKDKERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILAKEDLAPDVDFEAMANMTDGYSGSDLKNLCVTAAHCPIREILEKEKRERSVALSEKKPLPGLCGSGDIRSLKMDDFRYAHEQVCASVSSESNNMNELLQWNDLYGEGGSRKMRSLSYFM 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02257 1233 MobiDBLite consensus disorder prediction 1 37 - -
Pumo3g02257 1233 Coils Coil 889 909 - -
Pumo3g02257 1233 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 927 1103 - -
Pumo3g02257 1233 Pfam ATPase family associated with various cellular activities (AAA) 969 1098 IPR003959 GO:0005524|GO:0016887
Pumo3g02257 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 928 1204 IPR027417 -
Pumo3g02257 1233 Gene3D - 113 223 - -
Pumo3g02257 1233 Gene3D - 927 1206 IPR027417 -
Pumo3g02257 1233 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 411 1232 - -
Pumo3g02257 1233 MobiDBLite consensus disorder prediction 278 337 - -
Pumo3g02257 1233 MobiDBLite consensus disorder prediction 280 296 - -
Pumo3g02257 1233 SMART AAA_5 965 1102 IPR003593 GO:0016887
Pumo3g02257 1233 CDD RecA-like_ATAD1 932 1098 - -
Pumo3g02257 1233 Pfam AAA+ lid domain 1122 1157 IPR041569 -
Pumo3g02257 1233 MobiDBLite consensus disorder prediction 1 107 - -
Pumo3g02257 1233 ProSitePatterns AAA-protein family signature. 1072 1091 IPR003960 GO:0005524|GO:0016887
Pumo3g02257 1233 MobiDBLite consensus disorder prediction 309 337 - -
Pumo3g02257 1233 Gene3D - 1101 1195 - -
Pumo3g02257 1233 SUPERFAMILY SMAD/FHA domain 114 209 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02257 Pumo-Chr3 34473580 34510319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02257 928 1172 Calmodulin-binding Proteins AT3G56690 39.286 8.81e-41 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02257 - - gmx:100800938 2169.81