Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02251 ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGACATGGCCAGAAGCTCCCTTCTGTTGGCTTCAAGAAGCTCAAAAAGATCATGAAAATGTGTGGGAGAGCCTCCAAATTCCACACTCAACCTACCTGCCCTGATCATTGCCCAGTGTGCGATGGAACCTTTTTCCCCTCCCTTCTCAATGAAATGTCAGATATAGTAGGGTGCTTTAATCAGCGCGCGCAGGAATTGTTGGAACTACATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTTCACGGGAATCATACTGCTCTAATAGAAGAAGGCAAAGATCTAGTCATGTATGCACTCATAAATTCCATTGCAATTCGAAAAATCTTGAAGAAATATGATAAGATTCATTATTCCAAGCAAGGCCAATTATTCAAGTCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAAAGTCCCTGGCTTTGTGAGCTTATTGCCTTACACATTAACTTAAGGGAAACGAAAGCCCAGCCAAGGGAGGCATCTGCACTATTTGATGGATGTTATCTCACATTCAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCGTCAAAATTGATATTGACTTGACCTGCTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACGTGCGGCCACATATTCTGCTACACCTGTGCTTGCTCAGCTGCATCAGTTACCATTGTCGATGGACTTAAGGAAGCAAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGAGAAGAGTATATGAAGATGCTGTGCACTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCAGGGAGTACTGGGAGGAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTAAAGCAAGTGAAGGAGCACTGGGAAAAGCAGTGTAGGGCGTTCATGGGCATCTAA 954 0.434 MKFCKTYQQYMQGHGQKLPSVGFKKLKKIMKMCGRASKFHTQPTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQELLELHLASGFRKYFLMLKGKFHGNHTALIEEGKDLVMYALINSIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRETKAQPREASALFDGCYLTFKDGKPSLTCELFDSVKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSAASVTIVDGLKEANPKEKCPLCRERRVYEDAVHLEELNILLGRSCREYWEERLQMERVERVKQVKEHWEKQCRAFMGI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02251 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Pumo3g02251 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
Pumo3g02251 317 CDD RING-HC_BAH1-like 203 276 - -
Pumo3g02251 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Pumo3g02251 317 CDD SPX_BAH1-like 2 140 - -
Pumo3g02251 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 315 IPR013083 -
Pumo3g02251 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 IPR033326 -
Pumo3g02251 317 SMART ring_2 213 261 IPR001841 -
Pumo3g02251 317 SUPERFAMILY RING/U-box 206 265 - -
Pumo3g02251 317 Pfam Zinc finger, C3HC4 type (RING finger) 210 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02251 Pumo-Chr3 34408766 34412102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02251 210 262 C3H Transcription Factor Family AT4G28270 41.379 3.46e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02251 K16275 - gmx:100803060 609.372