Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02237 ATGGACATTGCTTCTCTTGAGAAGTTCCTTCAGGAAAGGATTAAGGTCGGCGGCAAGGCCGGTGCACTCGGCGATTCCATTACCGTCACTCGGGACAAGAGCAAGATCACCGTTACCTCTGACAGCAACTTCTCTAAACGGTATCTTAAATATTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGGGTGATTGCATCCAACAAGGACAGGAATGTCTATGAGTTGAGATACTTCAACATCGCTGAGAATGAGGGTGAAGAGGAAGACTGA 285 0.4596 MDIASLEKFLQERIKVGGKAGALGDSITVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02237 94 FunFam 60S ribosomal protein L22-2 1 94 - -
Pumo3g02237 94 Pfam Ribosomal L22e protein family 1 92 IPR002671 GO:0003735|GO:0005840|GO:0006412
Pumo3g02237 94 Gene3D - 1 94 IPR038526 -
Pumo3g02237 94 PANTHER 60S RIBOSOMAL PROTEIN L22 1 94 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02237 Pumo-Chr3 34241302 34243454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02237 1 94 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 90.426 3.35e-50 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02237 K02891 - gmx:100500073 175.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02237 3 34241302 34243454 Pumo3g02237 3 34241302 34243454 ECH
Pumo3g01997 3 31105658 31106902 Pumo3g02237 3 34241302 34243454 ECH