Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02227 ATGCGGTGGTCGGTAATTGCCTCTGTCGCCGCAAGCGGCGGCTGGAATACCTTCTCTACTAGCTTCGACCTTCTCTACCTCGGCACCATTGTGAACTCCTACGGCATCGACAAACTATCCGACGCACGTGCCGCTGCGATGAACCTCGGGAAATGGACTTGCCGAAGCTTCAGCCATTGCCGCTGCTGGCAAAGGCAAGCAAGCGTTGAGGTTTTGCAAGGAGAAACTCAAGTAAATAAGTATGCCAGTAATGGCAAGGTCATGTTTGCCTCCACCATCCTACTCTTCCTATTAGTAATCATCGTGGTTTTCGTTCACACCTTCCGCGATTCATGCTTCCGTCGCCGTCGCCGCCGCCTCCGCCGCCACGCTATTCGAACCGATTCCTCTGTGGCTTTTAATGAAGGCCTTCGTCCTTCCGTTCTCAAATTCCTTCCCACTTTCACTTACTCCTCCGAGACCCACCGCTCCCTCCACGACTGCGCCGTCTGCTTGTCGGAGTTCGGCGACGGCGAAGAAGGCCGCGTCCTTCCGAACTGTAACCACGCTTTCCACGCCCATTGCGTTGACACTTGGTTCCGCGCTCACTCTAACTGTCCACTTTGCCGAACCCCGGTTCACCGACACGCCGCACCGGTCCAACCGTCCTCCAATATTGAACCGGGTTCTTTTCCTGCACCGGTTTGGTGCCCAAGAAAGTCGTTGGAGCTGGTATTGGAGCTAGGAGCAGACCCGGATTCGGAGCCGGGTCGTGGACCCACGATATCACGGGTTGAGAATTGA 783 0.5581 MRWSVIASVAASGGWNTFSTSFDLLYLGTIVNSYGIDKLSDARAAAMNLGKWTCRSFSHCRCWQRQASVEVLQGETQVNKYASNGKVMFASTILLFLLVIIVVFVHTFRDSCFRRRRRRLRRHAIRTDSSVAFNEGLRPSVLKFLPTFTYSSETHRSLHDCAVCLSEFGDGEEGRVLPNCNHAFHAHCVDTWFRAHSNCPLCRTPVHRHAAPVQPSSNIEPGSFPAPVWCPRKSLELVLELGADPDSEPGRGPTISRVEN 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02227 260 Pfam Ring finger domain 160 203 IPR001841 -
Pumo3g02227 260 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 79 207 IPR044675 -
Pumo3g02227 260 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Pumo3g02227 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 208 IPR013083 -
Pumo3g02227 260 SUPERFAMILY RING/U-box 142 209 - -
Pumo3g02227 260 SMART ring_2 161 202 IPR001841 -
Pumo3g02227 260 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02227 Pumo-Chr3 34105907 34109314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02227 81 211 Rapid Response to Elicitors AT3G16720 41.781 4.80e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02227 - - gmx:102669188 290.041