Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02224 ATGCTTTCCTTCTCGGTCTTGGCCTCATTGTCCATAGCAGATACCGGTTCATCCTCCATTGTTCCACCCGAAACCGTTTGCGGGTCCACCCTAGACCCTACTTATTGCAAAACCGTGCTTGCTAATAGTAATCAAAATGGCAACATCTTCGACTATGGTCGCATTTCTTTCCGAAAGTCCTTGTCCCAAGTCCGTAAGTTCTTGAACTTAGTGGACTCGTATCTTCAAAGTAGCTCGTCTTTGTCTCAATACACAATTGGCGCTCTTGAAGATTGTCGATTCCTTGCTGAACAAAGTCTAGAATACTTATCAAACATCTATGCCACTGCCAACCAAGCTAGTGGTGTTCTTCCCACTTCTCAAGCTGAAGATTTTGAAACCTATCTCAGTGCCGTTTTGACTAACCAACAAACATGTTTAGATGGGTTACAAAGTTCGGCTTCAGATGCAAGAGTGAAGAACGACCTGTCCTCATCCCTCTCTGATGACTCAAAGCTTCACAGTGTCACATTGGCTTTGTTCCTAAAGGGTTGGGTGCCTGAGAAGAAAATCATGACATCATGGCCACAAAATGGGAGACATTTGAATTTCAAAAATGGTCGCTTACCATTGAAGATGTCAGACCGAGCACGTGCTATTTATGATTCCGCTAGACACCATGGGAGGAAACTACTGCAAACCGACGAAAGTGTTGTGGTAAGTGACATTGTTGTTGTTAGTCAGGATGGAAGCGGAAACTTCACCACTATCAACGATGCAATTGCTGCTGCACCAAATAACACAGCTGCTGCTGATGGCTACTTCCTTATTTTTATCACTGAGGGAGTGTATCAGGAATATGTATCCATTGCCAAAAACAAGGAGTATTTGATGCTAGTTGGAGATGGAATCAATCGGACAATCATCACGGGCAATCATAGTGTTGGGGATAATTTTACAACATTCAATTCAGCAACAGTTGGTAAGCAAAAATAA 975 0.4297 MLSFSVLASLSIADTGSSSIVPPETVCGSTLDPTYCKTVLANSNQNGNIFDYGRISFRKSLSQVRKFLNLVDSYLQSSSSLSQYTIGALEDCRFLAEQSLEYLSNIYATANQASGVLPTSQAEDFETYLSAVLTNQQTCLDGLQSSASDARVKNDLSSSLSDDSKLHSVTLALFLKGWVPEKKIMTSWPQNGRHLNFKNGRLPLKMSDRARAIYDSARHHGRKLLQTDESVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTAAADGYFLIFITEGVYQEYVSIAKNKEYLMLVGDGINRTIITGNHSVGDNFTTFNSATVGKQK 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02224 324 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 176 IPR035513 -
Pumo3g02224 324 Pfam Pectinesterase 237 321 IPR000070 GO:0030599|GO:0042545
Pumo3g02224 324 PANTHER PECTINESTERASE 22 321 - -
Pumo3g02224 324 SMART PMEI_2 18 173 IPR006501 GO:0004857
Pumo3g02224 324 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 25 174 IPR035513 -
Pumo3g02224 324 SUPERFAMILY Pectin lyase-like 232 320 IPR011050 -
Pumo3g02224 324 CDD PMEI-like_3 25 151 - -
Pumo3g02224 324 NCBIfam pectinesterase inhibitor domain 14 174 IPR006501 GO:0004857
Pumo3g02224 324 Pfam Plant invertase/pectin methylesterase inhibitor 24 173 IPR006501 GO:0004857
Pumo3g02224 324 Gene3D - 231 324 IPR012334 -
Pumo3g02224 324 FunFam Pectinesterase 24 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02224 Pumo-Chr3 34089632 34090606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02224 7 319 Carbohydrate Esterase AT4G02330 48.494 1.31e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02224 K01051 - gmx:100786124 414.846