Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02223 ATGAACAACCTCACACTTGCATCCATTCTGACCTTGATTTCCGCGCTACTCTTCTTGGGAACTCATTTCACTAACACCCCAACAAGAGCCCCAGAAGAACACCACCTCCATTTTCAAAAGCACATACAAGTAGCCCAATCCACATGCGAAGGAACACTCTACCCAGACCTATGTGTCTCAACCCTGGCCACATTCCCAGATCTTGCCACAAAATCTGTCCCACAAGTGATCTCCTCAGTGGTCAACCACACAATGCACGAGGTAACATCATCGTCCTACAACTGCAGCGGCCTCAGAAAGAAGCTCAGAAATCTCAACCCACTCGACCAGAGAGCCCTCGACGACTGTCTCAAACTGTTCGAAGACACCATCGTTGAGCTCAAAACCACCATCGACGATCTCTCCAAGAGCACCATAGGGTCCAAGCGGCACCACGACTTGCAGACTCTGCTGAGCGGAGCAATGACCAACTTGTACACGTGCCTTGACGGCTTTGCGTACAGCAAAGGGCGCGTGAGGGACAGAATCGAGAAGAAGTTGCTCGAGATATCGCATCACGTGAGCAACTCGCTGGCCATGCTGAACAAAGTGCCTGGAGTGAACAAATTAACAAGTTCGGAATCTGATGAGGTGTTCCCAGAATATGGAAAGATGAAAAAGGGGTTCCCCTCGTGGGTGTCCTCCAAAGACCGAAAGCTTCTCCAAGCTAAAGTGAATGAGACCAAGTTCGATCTTCTTGTTGCCAAAGATGGCACTGGCAACTTCACCACTATAGGGGAAGCAGTCGCTCTGGCTCCTAACTCCAGCACAACCAGGTTTGTGATACACATAAAAGCGGGGGCATACTTCGAGAATGTGGAAGTGATAAGGAAGAAGACGAATCTGATGTTTGTTGGAGACGGGATTGGAAAGACAGTAGTGAAAGGCAGTAGGAATGTCGTGGACGGGTGGACCACTTTTCAATCTGCTACTGTTGCTGTTGTAGGAGCAGGATTCATAGCAAAGGGTATAACCTTTGAGAACTCAGCAGGCCCTGACAAACACCAAGCAGTGGCACTGAGAAGTGGTGCTGACTTCTCAGCTTTCTACCAATGCAGTTTTGTTGGCTACCAAGACACTCTCTACGTGCATTCCCTACGCCAATTCTATCGCTGA 1155 0.4926 MNNLTLASILTLISALLFLGTHFTNTPTRAPEEHHLHFQKHIQVAQSTCEGTLYPDLCVSTLATFPDLATKSVPQVISSVVNHTMHEVTSSSYNCSGLRKKLRNLNPLDQRALDDCLKLFEDTIVELKTTIDDLSKSTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGRVRDRIEKKLLEISHHVSNSLAMLNKVPGVNKLTSSESDEVFPEYGKMKKGFPSWVSSKDRKLLQAKVNETKFDLLVAKDGTGNFTTIGEAVALAPNSSTTRFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKGSRNVVDGWTTFQSATVAVVGAGFIAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYR 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02223 384 Coils Coil 117 137 - -
Pumo3g02223 384 PANTHER PECTINESTERASE 21 384 - -
Pumo3g02223 384 NCBIfam pectinesterase inhibitor domain 28 196 IPR006501 GO:0004857
Pumo3g02223 384 CDD PMEI-like_3 47 199 - -
Pumo3g02223 384 Gene3D - 238 384 IPR012334 -
Pumo3g02223 384 SMART PMEI_2 40 193 IPR006501 GO:0004857
Pumo3g02223 384 Pfam Pectinesterase 244 384 IPR000070 GO:0030599|GO:0042545
Pumo3g02223 384 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 198 IPR035513 -
Pumo3g02223 384 FunFam Pectinesterase 42 199 - -
Pumo3g02223 384 Pfam Plant invertase/pectin methylesterase inhibitor 46 193 IPR006501 GO:0004857
Pumo3g02223 384 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 199 IPR035513 -
Pumo3g02223 384 SUPERFAMILY Pectin lyase-like 242 384 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02223 Pumo-Chr3 34066654 34072796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02223 69 384 Carbohydrate Esterase AT4G02320 50.456 1.83e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02223 K01051 - gmx:100802881 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03414 5 83240246 83242268 Pumo3g02223 3 34066654 34072796 PCT