Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02217 ATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGAGGCCGCCGTCTCACGGCCTCCGAGCTCTGGCCAAACTCATTCGGCAAAGACGATGACTTCGACTTCGATTGCTCCCGCATCGCCAATCAACAACCCTCCACTCTCAAAAGGTCCCAACCTCCCAAAGCTAGCGAGCAGGTTGAGAACAAGCCGGTGAAGAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGTCCGTGGGGCAAATGGGCCGCGGAGATTCGCGATCCAAGAAAAGGGGTTCGCGTCTGGCTGGGTACCTTCAACACTGCAGAAGAAGCTGCAAGGGCTTATGATCGTGAAGCTCGAAAAATCCGCGGCAAAAAAGCCAAGGTGAATTTCCCCAACGAGGACGACGACTATTCCATTCAAGCTCGTAATTCAATTCCACCCCAAAACCCTCCCCTGTATCAGCAACAGTACCGTTGCGATCTCAACAATGCCCCTACAAACCTCAACTTTGAGTTCGGTTACGATCTGAACCACGCCGGGGCATTTCCGTCTCTCAACGCTGACTCCGTTGTTGTTTCCGGCGATGAAAATTCAGGGTTAGCGTCGGGTTCGGAGGGTGCTTATTCGACAACGGAGTTCATGGGGTCCACTCAGAACGGGAACGGATATTTGGGTGGAACGGTAATGGAGAAGGATAAAGAGACAGAGGTTATTGAAGCTCAAGAGGAAAAGAACAAAGTACAGGAGCTTTCTGAGGAACTGATGGCGTACGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAATCCACGCCACCGAATAATGTTCAGGAAAGCCTGGTCGGGGATCTCTGGAGTTTCGATTAA 876 0.516 MCGGAIIADFIPRRGGRRLTASELWPNSFGKDDDFDFDCSRIANQQPSTLKRSQPPKASEQVENKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDDYSIQARNSIPPQNPPLYQQQYRCDLNNAPTNLNFEFGYDLNHAGAFPSLNADSVVVSGDENSGLASGSEGAYSTTEFMGSTQNGNGYLGGTVMEKDKETEVIEAQEEKNKVQELSEELMAYENYMKFYQIPYYDGQSTPPNNVQESLVGDLWSFD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02217 291 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Pumo3g02217 291 Coils Coil 230 260 - -
Pumo3g02217 291 MobiDBLite consensus disorder prediction 46 69 - -
Pumo3g02217 291 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Pumo3g02217 291 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
Pumo3g02217 291 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 PANTHER DNA-BINDING DOMAIN 53 230 IPR044808 GO:0003700|GO:0009873
Pumo3g02217 291 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Pumo3g02217 291 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02217 Pumo-Chr3 34022665 34024385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02217 1 132 AP2-EREBP Transcription Factor Family AT3G16770 56.522 2.55e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo3g02217 AP2 8.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02217 K09286 - gmx:100780763 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02217 3 34022665 34024385 Pumo3g02217 3 34022665 34024385 ECH