Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02216 ATGGTGTCCTTGAAGCTTCAGAAGCGGCTCGCCGCTAGCGTGCTGAAGTGCGGCAGGGGCAAGGTCTGGCTCGATCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGACAAAACATAAGGAAGTTGGTTAAGGATGGGTTTATCATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGTTATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCACGACATGTACATGAAGGTGAAAGGTAATGTTTTCAAGAACAAGAGAGTCTTGATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACCTTGTCTGACCAGTTTGAGGCGAAGCGTGCCAAGAACAAGGCTAGCAGGGAGAGGAAAATTGCTCGGAGGGAGGAACGCTTGGCCCATGGTCCGGGAGAGAGGCCACCAGCAGCACCAACTGCTACACCTGCAACGGCATCCCAGCCAGCTCAAGCACCGAAGAAATCCAAGAAGTGA 639 0.5117 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAHGPGERPPAAPTATPATASQPAQAPKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02216 212 MobiDBLite consensus disorder prediction 195 212 - -
Pumo3g02216 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo3g02216 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo3g02216 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Pumo3g02216 212 MobiDBLite consensus disorder prediction 149 185 - -
Pumo3g02216 212 MobiDBLite consensus disorder prediction 149 212 - -
Pumo3g02216 212 MobiDBLite consensus disorder prediction 57 85 - -
Pumo3g02216 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Pumo3g02216 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 187 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pumo3g02216 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pumo3g02216 212 FunFam Ribosomal protein L19 1 56 - -
Pumo3g02216 212 Gene3D - 57 185 - -
Pumo3g02216 212 FunFam Ribosomal protein L19 57 188 - -
Pumo3g02216 212 MobiDBLite consensus disorder prediction 57 79 - -
Pumo3g02216 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pumo3g02216 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02216 Pumo-Chr3 34014073 34015778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02216 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.977 4.00e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02216 K02885 - gmx:100527501 383.259