Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02207 ATGGCAAAAGCAAATGCAAAGAACAAATCCCCCTCCACCGCGCTCCACCCTCCTTACTTCGAGATGATCGCAGATGCAATATCGTCGTTGAAAGAGCGCACGGGTTCGAGCCAGCCAGCGATAGCCAAGTTCATCGAGGACAAGCACAGCAAAGTGCTCCCTCCCAACTTCAGGAAACTTCTCTCCATTCAGTTGAAGAAATCTGTCCAATCAGAGAAGCTTTACAAGGTGAAAAACTCGTACAAGCTTTCTTCTTCCTCCACGGACAAACAGACCCAGAAGACCGAAACCGCGCCTAAACAGAAGGGTGAAAAGAAGAAGGTGGCTGAGAAGACTAAGAGGTTGAGTCAAGTGAAGACACCCGAAGCTCTCAAGAAGAAAGCCCCCACCAAGAAGAAATCTACGGTGGTGACAGCCTCGGGAGGAGGGAAAATGAAGCGTTTGAGTCAGGTGAAGACCCCCGAGGCCTTGAGGAAGAAGAAGCCCAACTTTACCCCCACCAAGCGCAAGACTTCTTCTCCCAAACCTTCCAGGCCCAACAAGAAACCTAGGAAATGA 558 0.5018 MAKANAKNKSPSTALHPPYFEMIADAISSLKERTGSSQPAIAKFIEDKHSKVLPPNFRKLLSIQLKKSVQSEKLYKVKNSYKLSSSSTDKQTQKTETAPKQKGEKKKVAEKTKRLSQVKTPEALKKKAPTKKKSTVVTASGGGKMKRLSQVKTPEALRKKKPNFTPTKRKTSSPKPSRPNKKPRK 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02207 185 MobiDBLite consensus disorder prediction 76 185 - -
Pumo3g02207 185 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g02207 185 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g02207 185 MobiDBLite consensus disorder prediction 76 94 - -
Pumo3g02207 185 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g02207 185 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g02207 185 PRINTS Histone H5 signature 164 183 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g02207 185 PRINTS Histone H5 signature 100 114 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pumo3g02207 185 Gene3D - 11 96 IPR036388 -
Pumo3g02207 185 SUPERFAMILY "Winged helix" DNA-binding domain 14 92 IPR036390 -
Pumo3g02207 185 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo3g02207 185 MobiDBLite consensus disorder prediction 95 129 - -
Pumo3g02207 185 PANTHER HISTONE H1 6 184 - -
Pumo3g02207 185 CDD H15 16 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02207 Pumo-Chr3 33844988 33846058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02207 17 83 Single Myb Histone (SMH) Gene Family AT1G72740 40.299 1.87e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02207 K11275 - gmx:100306187 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02207 3 33844988 33846058 Pumo3g02207 3 33844988 33846058 ECH