Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02187 ATGATGGAAACCAGTTACTCATCGCGAATGTTTCGCGGTGTTCGTTTCGTTCTCCGTGGCTTTAGTCCCGTCGCCGAAGCCCAGATCCGGTTCAAGCTTGTGGATGGCGGTGGAGTCGACGTAGGACAGTACGGTGGGAGTTGCACGCATGTCATTGTCGATAAGATTGCTTATGACGATCCTGTATGTGTTGCTGCTAGAAATGATCGGAAGACGCTCGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGAATGCCCGTGGATGCTACTTCGGTTATGTACAGACCTCTTAAAGACTTAGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCTCAGTTTTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAAGAGATTGGGTACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCCGAAGACATGTATAACAAGAGTGGTTTTGAACTAGAGATGATGGAGGAAGAGGCTAAGGATTCTGATGAAGAGGCTGAAGATTCTAAGCTGGGACAATCAGGGGGAAGAAATAGAAAACAAAGCCCCCTTCGTTCGAAATTTGGTACAGCTGCTACTACTCATGGATTGTCGAAATCAATAAGAGAGGCATCAGAGGCCTTACCAGATTGTACTGGTCCACAGGTTTGGCCAAATTTCAATAATGGTGAAGACTCTTTAACCATTCCGAGAAATAAGAACAGACCTGATCAAGACTTGAGTTTTCATAATGTTGATGACTCAAAGATAAGCTATCAGGCTCCAGATGTTTCTAGACATTCTACATCATGTCAGTTACCTGACAAAAATGTAGAGACCAGTGAGCCTAAGAATGCTGATTCTCCAAAGGTACCTGGCTGCCAGGATCTAGGCAATATGGGAAATACAAATTCATCTGGTCAGCAACCTGATCTGCATGACGACACCTCAGAGTCTAGGAAGTTGGTAAGTGACTTGAGAGCAACTTCTGCAAGTGCTGCTGGACTTGCACATTCCAATGAAAAGCTTAGAACTACGAGTTATTCTAGGAAGAACAAAAAGGGATTTACTCTCCCAAGGATCTTAGACGAAAGCTCAGGCAGAGAAGGCAACAACTGTGAAAACAGTAAGGTTGAAAAGGCTAGTGAGGGTGTCAAATCTACCAGTGTTGAAGTTTCTGGGAAAGGAAATGATTTTATTAAAGAAGACGAGTCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTTCTTTTACTAAATTAAAATCAAGAAAGAGTTCCGTCCCATCAGCAAATGGTAAATCTCAAGTATTAAAAGTGGCATCTCAGGTTGATGAGCCACCTGAAGCTGATGACTGTTTTTCTGTAGGCAAAGATGGTATAAATAACTCAAACACTTGCTCAGTTTCAAAACTTGCAGGCTCTACCTGCAACTCACTGGCATTTGATGAGCCTTTCTCAAGAAATGCAAGCCCAGAATCTGCTCGGTGTGATAATGTCTGTCAGAATTCACCACAAACTGCTGTTCAGAGCTTAAGTGGGTCTGAAATTAATGGCAAGCCTGATATCACATGTTCTGGAATGCAACAAGTTGATGGAAATGAAGCAGATCAACATAATGTAACTAAAAATCTTGATTGTTCATCACCGGGAAACAAAAAGTCACGTAATGTGGAATCTGCTGGTTGTACTAATTTGGATTTAAGCACCGAAGGCAGTAATAAACTGATTAGAAAATCACCCCGAAAGAAGTCGGTTGCCAAGAGAAATTTGGGTTCTAAACATAAAGTAGGTGCCACTGCTGGACAGAAAAGATCACTTTCCTTGAATAAAACTACCCTGCAAGGTGAAGGTGTAACTTTTTCCAGTGGAAGCAAAGAGATTGCAACTTGTGATGCGAAGATGCATCAGGGATGTCCCCAGATCCTTGATGTTAATAAAACAACAGAGCAAGAAACAGTTAGTAAAAATGCAGAAGACGCTGGTGACAGAACTGAGTTTTTGGACGATGAAACAGAGGCCCCAGATGACAAATGTGAATATGAGTTAGGAAGGGCACTTGATGAAGACTTGGTTCATCTTTCAAACAAGCCAGATGCAGCAAAAGAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGGAAGGCATAAATAAAATTGAAAAACAGAAAACATCTTCACTGGTAGTAAAGCATCAAGCAAGAAAACGTCCTGCTGGTAAAGTCAAGGCCACAGTTAGTAAATATGCAGAAGATGATGGTGACAGAACTGAGCTTTTGGACGATGAAACCAAGGCTCCACATGACAAATGTGAATACGAGTTAGGAATGGCACTGGATGAAGAATCTGTTCATCTTTCAAAAAAGTCAGATACAGCAACAGAAGAGAAGTCAGAAGCAATGTGCCCTGCAACAAAATGTGAAGAGTCAATGCCTCCTAAGAAAGGCACAAAAAAGACTGAAAAACAGAAGCCATCTTCACTGGTAGTAAAGAATCAAGCAAGAAAACGTCCTGCTGGTAAAGCCAAGGCCACAGTTGCCAAGGAATTATCTAAATCTAAAGTGGCAGTATCAGGGGAGAAGATTCCTAATGAGATGGGGCATGAGCCAGAGATAGAAACCGTGGAAGAAATGTCCTTTCCTGCTGATAAAAGTGACAACTCAGCTGTACTAAGAAAAAAGTCAGAGAATTTAGCTGAAGATGAAAAGGAGAATAGACCAATTGATGCAGAGCAGGATCAAGTGAAGGGCAGAAGCGATGGCAATCCAACTATTAAATCTAGTGTAAGGTCAGCAAAGATCAAGTCTAAGAAATTGGGGCTCAATCCATCTATATCAGAATCTAACACGAGAGTAAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGCCTGCAGAGAAAGGAGTTTCAACAAGTAGTCAAGCGTTTAAAAGGAAGGGTTTGTCGGGATTCTCACCAGTGGTCATATCAGGCGACACACTTCATTGCTCCAGACCCCATACGCAGGACTGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCCTAACTGCCAGTAGCCTGGCAGGAAAATTGTTGCCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAAGATGGCGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGAATTGTTGTATACGGCGATTGCATTGCCCCACCTTTGGATACTCTGAAACGTGTCATCAAAGCTGGAGATGGAACATTATTAGCAACTTCTCCTCCTTATACTCGCTTCCTTAGTACCGGAATCGACTATGCTGTAGTTAGTCCTGGCATGCCACGTGTTGACATGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCAGGGTTCTCCCTTGAGAGACATGTATTATATGGCACTCATGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGTAACGCAGAAGAGATTGTTGAAGAACTCGTTGCTCCTGAGGATTCCGGTGATGATGATGATATAATTTGCCAAGTATGTGGATCCCGCGATAGAGGAGATGTAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTCGGCTGTGGAATCGGTACCCATATCGATTGCTGCGATCCTCCACTAGCAAATGTCCCTGAGGAGGATTGGTTTTGTCCAAAATGCAGTAGCACCGGAAACTGCTCAAACAATCCCAGTAAAAGGAAAAAGACTGTTTTATCTTCATCTAAGTGTATGTGA 3981 0.4263 MMETSYSSRMFRGVRFVLRGFSPVAEAQIRFKLVDGGGVDVGQYGGSCTHVIVDKIAYDDPVCVAARNDRKTLVTALWVEHSADIGMPVDATSVMYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKEWVLLPEDMYNKSGFELEMMEEEAKDSDEEAEDSKLGQSGGRNRKQSPLRSKFGTAATTHGLSKSIREASEALPDCTGPQVWPNFNNGEDSLTIPRNKNRPDQDLSFHNVDDSKISYQAPDVSRHSTSCQLPDKNVETSEPKNADSPKVPGCQDLGNMGNTNSSGQQPDLHDDTSESRKLVSDLRATSASAAGLAHSNEKLRTTSYSRKNKKGFTLPRILDESSGREGNNCENSKVEKASEGVKSTSVEVSGKGNDFIKEDESISLLPQKRINEASFTKLKSRKSSVPSANGKSQVLKVASQVDEPPEADDCFSVGKDGINNSNTCSVSKLAGSTCNSLAFDEPFSRNASPESARCDNVCQNSPQTAVQSLSGSEINGKPDITCSGMQQVDGNEADQHNVTKNLDCSSPGNKKSRNVESAGCTNLDLSTEGSNKLIRKSPRKKSVAKRNLGSKHKVGATAGQKRSLSLNKTTLQGEGVTFSSGSKEIATCDAKMHQGCPQILDVNKTTEQETVSKNAEDAGDRTEFLDDETEAPDDKCEYELGRALDEDLVHLSNKPDAAKEEKSEAICPATKCEEAMPPKEGINKIEKQKTSSLVVKHQARKRPAGKVKATVSKYAEDDGDRTELLDDETKAPHDKCEYELGMALDEESVHLSKKSDTATEEKSEAMCPATKCEESMPPKKGTKKTEKQKPSSLVVKNQARKRPAGKAKATVAKELSKSKVAVSGEKIPNEMGHEPEIETVEEMSFPADKSDNSAVLRKKSENLAEDEKENRPIDAEQDQVKGRSDGNPTIKSSVRSAKIKSKKLGLNPSISESNTRVKTEAACFILSGHRLQRKEFQQVVKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSLAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTLLATSPPYTRFLSTGIDYAVVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWAERSFDKLKSNAEEIVEELVAPEDSGDDDDIICQVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLANVPEEDWFCPKCSSTGNCSNNPSKRKKTVLSSSKCM 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 575 615 - -
Pumo3g02187 1326 Gene3D BRCT domain 99 224 IPR036420 -
Pumo3g02187 1326 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 830 920 - -
Pumo3g02187 1326 Pfam BRCA1 C Terminus (BRCT) domain 1010 1074 IPR001357 -
Pumo3g02187 1326 CDD BRCT_TopBP1_rpt7 1006 1079 - -
Pumo3g02187 1326 ProSiteProfiles Zinc finger PHD-type profile. 1249 1305 IPR019787 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 300 318 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 944 980 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 336 351 - -
Pumo3g02187 1326 SUPERFAMILY BRCT domain 1007 1093 IPR036420 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 221 246 - -
Pumo3g02187 1326 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 4 1317 IPR044254 -
Pumo3g02187 1326 SMART BRCT_7 998 1079 IPR001357 -
Pumo3g02187 1326 SMART BRCT_7 1117 1204 IPR001357 -
Pumo3g02187 1326 SMART BRCT_7 8 86 IPR001357 -
Pumo3g02187 1326 SMART BRCT_7 106 183 IPR001357 -
Pumo3g02187 1326 Pfam twin BRCT domain 111 175 IPR001357 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 794 816 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 944 964 - -
Pumo3g02187 1326 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Pumo3g02187 1326 SUPERFAMILY FYVE/PHD zinc finger 1243 1308 IPR011011 -
Pumo3g02187 1326 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Pumo3g02187 1326 Pfam PHD-finger 1251 1304 IPR019787 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 830 844 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 201 434 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 261 275 - -
Pumo3g02187 1326 Gene3D BRCT domain 1116 1215 IPR036420 -
Pumo3g02187 1326 Gene3D BRCT domain 999 1115 IPR036420 -
Pumo3g02187 1326 SMART PHD_3 1251 1303 IPR001965 -
Pumo3g02187 1326 ProSiteProfiles BRCT domain profile. 1007 1089 IPR001357 -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 276 290 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 859 873 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 774 816 - -
Pumo3g02187 1326 MobiDBLite consensus disorder prediction 575 649 - -
Pumo3g02187 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1216 1318 IPR013083 -
Pumo3g02187 1326 Gene3D BRCT domain 1 95 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02187 Pumo-Chr3 33657504 33664609 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02187 129 217 Core DNA Replication Machinery Family AT4G02110 74.157 2.15e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo3g02187 BRCT 2.8e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02187 K10728 - gmx:100799144 2286.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02187 3 33657504 33664609 Pumo3g02187 3 33657504 33664609 ECH