Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02181 ATGGAGCTCTCTGTGGTTGCAAGAAACATGGAAGAAGTTGTATTGCTGGTTGATGATCTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACAGTTAAGTTTGCTCACAGAGATTGCATTCAGACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCCGGATATACAGCAGCCCCAAAGAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAAGGATTGAACAAGAACCGTTAAACACAAGAATAGTGAGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCGGATAGAAGCGCGGCTTGTTGTCGATCCCTGGCTTTAGCTTTTACACTCATCTTGCTTGTAAGACATATTTTTGCACTCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGGGCCAGTGGAATTATTATACCCATGTACATAATTATTAAGGCGATCGGAGCCATTCATGACAATATTAAGCGTCACCATCATCAGGATTCTGAGGATGACTCATCGATATCTGATGGAGATGATGAAGAAAATGAGACACCAAATGATGAAATTTTAAGACATTCACAATCATAG 711 0.398 MELSVVARNMEEVVLLVDDLRSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAAPKKSQIADAAMTIRDSLQISRIEQEPLNTRIVSIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHIFALLTDGMEDYPFTILTVFLLRASGIIIPMYIIIKAIGAIHDNIKRHHHQDSEDDSSISDGDDEENETPNDEILRHSQS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02181 236 SUPERFAMILY RING/U-box 28 81 - -
Pumo3g02181 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 26 204 IPR033275 -
Pumo3g02181 236 SMART ringv_2 28 77 IPR011016 GO:0008270
Pumo3g02181 236 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Pumo3g02181 236 MobiDBLite consensus disorder prediction 205 236 - -
Pumo3g02181 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 87 IPR013083 -
Pumo3g02181 236 Pfam Protein of unknown function (DUF3675) 82 194 IPR022143 -
Pumo3g02181 236 ProSiteProfiles Zinc finger RING-type profile. 29 76 IPR001841 -
Pumo3g02181 236 CDD RING_CH-C4HC3_MARCH 29 76 - -
Pumo3g02181 236 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Pumo3g02181 236 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02181 Pumo-Chr3 33559969 33563904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02181 29 76 C3H Transcription Factor Family AT2G37950 44.898 2.41e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02181 3 33559969 33563904 Pumo3g02181 3 33559969 33563904 ECH
Pumo5g03451 5 83797380 83799590 Pumo3g02181 3 33559969 33563904 PCT