LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02180	ATGGCCTTGAGGCTTTCATCTTTGGTGATCCTACTGGCATATGGTGCGTTGATAGTTCTCATCTTTTTGACTCCATGCTGGTATGTCATGGTCATACGAATGGAGAAACGTGTGAATTTGAACTCAAAAAACATCGCATCCCAATTGCAATCAGAAATTGAGCACTCAGCTGAACTGTTACACCCTATGAAATCATCTTCAACAAATTTAGCAAGATTCCTCAGTTCAGCCCTTGATACTACTAATATCTCCTTCTCTGATATTGAGAGCAAGGTGGCTCCGTTATTATTTCAAGCATTTGAGACAGTGCCATACTTAGCCCAAATCTCATACATAGGGATGGAAGGTCTCTTTTTCTCGTACTACACTGATCATGATCAAGCTCTAGCTATGTACTCTAACTCATCATCTAGTTGGGGTGCCTCAAATATAACTTACATTCAACCTGTGAATCGTGAAACCGGAGAGCTTTATGGGGAAGCCATAGACATAATATCCAACCCCTTTATCAATGCAAGCTGGATTGGGGAAGCAGTTAATGTGTCAAGTGGGTATGCCTCATTGGGAACCAGGTGGGGCAATGATGGTGATATTGATCTTTTGTTCCTTAATTCAGCTAGAATCACTAAAAGAGGAGTGATCTCTCTTGGGTTTTCAGCAAAGGCAATAACTGATTTTGTCACTCGCATTGACCAACAACAAGGCACGAGGTCCTATTTGGCTACCAAAGAAGGAAAAGTTCTTGTGGAAGGGATTCAACAATCCCATTTGGTCATTTCTAATGATAGGGTTTCCTTTCAATCAATGAATGCAAATGGCGATCCCACAAGTAATGAGGACACTGTCTCGTGCAAGGATGAAGGCGTTGCTTCTACTTTGAATATTCTGGATACTCGGTATTTAATTCACTGCTACACCATCGATATAATGGGAATAGAATCGGTGTATGTCTTGGCTGTCCCACAAAATAGATTTACGAGCTTTGATCTAAATTACAAGGAAAAGGGATTGACACTGTTTGTGATAACAATGGTCACTATATTTATTGCTTTGTTCAGTTTTCTATTCATAAACTGTAGAGCCACGAGGCGAGAAATGCATTTGTTAGTCTCACTCATCAAACAGTGTGAAGCCACCCACCAAGCTGAGAAAAAGAATATGAATAAGAGCATTGCTTTTGCAAGTGCCAGCCATGATGTTCGCGCTTCTCTCGCAGGCATTACCGGTTTGGTAGAGATGTCTTATGAGTTAGTTGCCCCCGGTTCAGAATTGCATACCAATTTGAAACAAATGAATGATTGCACCCAAGACTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATAGAGGCAGGAAAAATGCAACTTGAGGAAGAGGAATTTGATGTGTTCCAACTCTTAGAAGATGTAGTTGACTTTTACCATCCCGTGGCTATGAAGAAAAGTGTGGATCTCGTATTGGACCCTTGTAATGGTTCTGTTGTGAGATATTCACGCGTGAAAGGTGATAGGGGCAAACTGAAACAAGTTTTGTGTAATTTACTGAGCAATGCTGTGAAATTCACTGATGAGGGGCACATATCGGTTCGTGCATGGACTCAGAAGCCAAGATTATTGAAGAACTCAACAGTCACTTGTAACCAATTTGGTTTCAAGAAATATTTATCATGCTTATTTCGTAACAAAAACGAAGCACGTGATGATTTGGAATCCATGCGTTCAATCCAAGAAGATCCGCATTCTATGGATTTTGTGTTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTCTTCGAGAATTATGTCCAAGTCAAAGAAACTGCTCTTGGCCAAGGAGGAACTGGCTTGGGGCTTGGGATTGTGCAGTCTTTGGTGCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACTGGTGAAAAAGGAACATGCTTCAGGTTCAATGTGCTCCTCACTTTATGTGAGAGTGAGGCAATGACAGATGGTAGCACAAGGGAAGGTATTGAGTGTGGATCAGGAGATAGAATGCAAGCTCATGGACAAACCATGTATGCTACAAGTTCTAGTTCTAGAATTTGTTCCATGAGTCCTAGGTTACATATTTGCAGTCCTAAGCCTGAGGCTTCCCTTGTGGTTTTTTTTATTGCTGACAAGGAGCGCCAAAGGACTTCAAAAAGGTTCATAGAGAGGTTAGGGATCAAAGTCAAAGTTGTGAATTCAGGAAAACATTTGTTTTTTACTCTCAATAAGATTAAGCAAAAGGGTCAGCATTCCAGTGACCAAACTTCTCCAGGGTCTTCAGATTTGAGTTATAGGTCTAATATATCTCATAATTCTCTTGGCATAGCCACAAGAGTTCCTTTGAGTTCTATGGATGGAACTGAGCACATGCCTTTAGTTTTCAAGAAGACTGATATTGGAGCTTCCCCTGGCTTCATCCTTATTGTGATTGATGCAAATGCAGGACCATTTTCTGAGCTTTATACGATTGTATCAAGCTTCAAGAAAGACCTTCGCAACCCTTGTAAAGTTGTTTGGTTGGATAAGCCCTTTATGCGTAGCATCAACTTCAAGGCCATTGATCAAGATGACATTGTCATATCCAAACCATTTCATGGTAGCCGTTTGTTCCAAACTATAAAGCTTCTTCCTGAGTTTGGTGGTGCTTGGCAAAGTAGTTCTAGTATTAGAAAGGGTAAGGCTAAGAGGGAAATTACTAATGAGAGAGCTGCATTGAAGACTTATAAGGATTCAAGTTTGTCAAAATACAAGTCTCCTCTATTGGACAGATCACAAGTGTCTCCAACTGATGAAAACACATTTCAAAGTGCTGAAGAAATTTGGAAGGGAAATCGGCAATCCAAGGCAAAAATAACTCTTGCTCATCAAGGAGAAATACAAGAATGTGGGAACTCATCAGGGTGTGACAAACCCTTGAGTGGTAAGAAGTTTCTGGTTGTTGAGGACTCTGAATTGTTGCGCAAGCTAGCTTCTGCTACTTTGATTTCTCTTGGTGCAACTATGGAGCAATGTGAGAATGGTGAACAAGCTGTGCGGCTAGTTGATGAGGGTCTAACTCGGGATTTTCCTGTTCTTCCTTATGATTACATCTTAATGGATTGTCAGATGCCAGTAATGGATGGGCTTGAAGCAACGAAGTGGATACGAAAGATAGAGAAACCCTATGGTGTTCGCATTCCTATCATTGCATTGACTGCTTGCACTGAAAAAATGTCGATAGAGACTGGAATAGACTTTCATATAGTGAAGCCCATTAAGAGAGAGCATTTACTTGAATCCATCAGATATATACATGCTAAAGCACTAAAGCGTGACACAATGTAG	3372	0.4066	MALRLSSLVILLAYGALIVLIFLTPCWYVMVIRMEKRVNLNSKNIASQLQSEIEHSAELLHPMKSSSTNLARFLSSALDTTNISFSDIESKVAPLLFQAFETVPYLAQISYIGMEGLFFSYYTDHDQALAMYSNSSSSWGASNITYIQPVNRETGELYGEAIDIISNPFINASWIGEAVNVSSGYASLGTRWGNDGDIDLLFLNSARITKRGVISLGFSAKAITDFVTRIDQQQGTRSYLATKEGKVLVEGIQQSHLVISNDRVSFQSMNANGDPTSNEDTVSCKDEGVASTLNILDTRYLIHCYTIDIMGIESVYVLAVPQNRFTSFDLNYKEKGLTLFVITMVTIFIALFSFLFINCRATRREMHLLVSLIKQCEATHQAEKKNMNKSIAFASASHDVRASLAGITGLVEMSYELVAPGSELHTNLKQMNDCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFQLLEDVVDFYHPVAMKKSVDLVLDPCNGSVVRYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHISVRAWTQKPRLLKNSTVTCNQFGFKKYLSCLFRNKNEARDDLESMRSIQEDPHSMDFVFEVDDTGKGIPKENYKSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGEKGTCFRFNVLLTLCESEAMTDGSTREGIECGSGDRMQAHGQTMYATSSSSRICSMSPRLHICSPKPEASLVVFFIADKERQRTSKRFIERLGIKVKVVNSGKHLFFTLNKIKQKGQHSSDQTSPGSSDLSYRSNISHNSLGIATRVPLSSMDGTEHMPLVFKKTDIGASPGFILIVIDANAGPFSELYTIVSSFKKDLRNPCKVVWLDKPFMRSINFKAIDQDDIVISKPFHGSRLFQTIKLLPEFGGAWQSSSSIRKGKAKREITNERAALKTYKDSSLSKYKSPLLDRSQVSPTDENTFQSAEEIWKGNRQSKAKITLAHQGEIQECGNSSGCDKPLSGKKFLVVEDSELLRKLASATLISLGATMEQCENGEQAVRLVDEGLTRDFPVLPYDYILMDCQMPVMDGLEATKWIRKIEKPYGVRIPIIALTACTEKMSIETGIDFHIVKPIKREHLLESIRYIHAKALKRDTM	1123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02180	1123	Gene3D	-	971	1119	-	-
	Pumo3g02180	1123	SUPERFAMILY	CheY-like	989	1115	IPR011006	-
	Pumo3g02180	1123	PRINTS	Bacterial sensor protein C-terminal signature	620	638	IPR004358	GO:0016310\|GO:0016772
	Pumo3g02180	1123	PRINTS	Bacterial sensor protein C-terminal signature	586	600	IPR004358	GO:0016310\|GO:0016772
	Pumo3g02180	1123	PRINTS	Bacterial sensor protein C-terminal signature	604	614	IPR004358	GO:0016310\|GO:0016772
	Pumo3g02180	1123	CDD	HisKA	393	450	IPR003661	GO:0000155\|GO:0007165
	Pumo3g02180	1123	ProSiteProfiles	Histidine kinase domain profile.	395	662	IPR005467	-
	Pumo3g02180	1123	SUPERFAMILY	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	443	657	IPR036890	-
	Pumo3g02180	1123	ProSiteProfiles	Response regulatory domain profile.	992	1114	IPR001789	GO:0000160
	Pumo3g02180	1123	SUPERFAMILY	Homodimeric domain of signal transducing histidine kinase	377	456	IPR036097	GO:0000155\|GO:0007165
	Pumo3g02180	1123	Pfam	Response regulator receiver domain	994	1110	IPR001789	GO:0000160
	Pumo3g02180	1123	Pfam	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	504	660	IPR003594	-
	Pumo3g02180	1123	Gene3D	-	376	455	-	-
	Pumo3g02180	1123	SMART	REC_2	991	1110	IPR001789	GO:0000160
	Pumo3g02180	1123	SMART	HKATPase_4	504	662	IPR003594	-
	Pumo3g02180	1123	CDD	REC_hyHK_CKI1_RcsC-like	993	1110	-	-
	Pumo3g02180	1123	Gene3D	-	456	666	IPR036890	-
	Pumo3g02180	1123	PANTHER	TWO-COMPONENT HISTIDINE KINASE	61	1111	-	-
	Pumo3g02180	1123	SMART	HisKA_10	388	454	IPR003661	GO:0000155\|GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02180	Pumo-Chr3	33548143	33555135	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02180	1	1116	Histidine Kinase Gene Family	AT2G47430	38.894	0.0	716

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Pumo3g02180		HATPase_c	1.6e-25	CL0025

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02180	-		-	var:108325233	1451.42