Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02156 ATGGAGAAGAAAGAGATGGCTGTGAAAACTGAGGATGCGGTTGGTTCCGCTTCTTTCCCTTGTTATAATTCAAACGTTTATCCATTTTCAAACGTGTCTGATTTCTCTGAGGTGGAAAAAAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTTCTTGAGTTACCTCAGCTTTCAACTGTGTCTGTGCAACCTCATCACTCTACAGTTAAGGTTCCGTCTGATAACGGGAAAGAGTGTTCCGAGGTGTTGAACCACCAACCTGCCACTCCAAACTCTTCTTCCATTTCATCCGCGTCCAGTGATGCAGTCAATGATGAACAGAATAAGACTCTAGACCAAGCAGAAGAAGATGATGAGGAAGAACAAGGACAGCACAAGACTAAGAAACACTTCCTTCAGTTTTCAAAAATTAATTTTAGCATTGAATGGTTCATGGGATTTGAAGAACACACAATTTGGGATGGTCTCTCTTGTATAAAGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCACTGATCCAAGCGTTGTAGTGACAACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGCTCAGGTGTCTCCGCTGCATATGCCACCAACTTTGGTTCAGTTTTGCCACCAGGAAACTACTTATCCCAGTATCATCAGCACCACCACCATCAACAACAACAACAACTTCTTGTCAACACATTGTCCTCTTTGGGTTTCCCTTACAATGATTCTTCATCTCCAAAGAACGCCGTTTTAGCTCATGAGAGACGGCTTTGTAGTAATCAAGGGACGAATGCGTTTCTAAGGGACCATGGACTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG 1053 0.4397 MEKKEMAVKTEDAVGSASFPCYNSNVYPFSNVSDFSEVEKSSLGFMELLGVQDYSPLLELPQLSTVSVQPHHSTVKVPSDNGKECSEVLNHQPATPNSSSISSASSDAVNDEQNKTLDQAEEDDEEEQGQHKTKKHFLQFSKINFSIEWFMGFEEHTIWDGLSCIKLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGVSAAYATNFGSVLPPGNYLSQYHQHHHHQQQQQLLVNTLSSLGFPYNDSSSPKNAVLAHERRLCSNQGTNAFLRDHGLLQDVVPSHMLKEE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02156 350 Gene3D WRKY domain 178 254 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g02156 350 ProSiteProfiles WRKY domain profile. 188 253 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g02156 350 MobiDBLite consensus disorder prediction 68 113 - -
Pumo3g02156 350 FunFam WRKY transcription factor 57 179 253 - -
Pumo3g02156 350 MobiDBLite consensus disorder prediction 68 133 - -
Pumo3g02156 350 Coils Coil 110 130 - -
Pumo3g02156 350 SUPERFAMILY WRKY DNA-binding domain 185 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g02156 350 PIRSF WRKY_txn_fact_IIc 1 144 IPR017396 GO:0003700
Pumo3g02156 350 PIRSF WRKY_txn_fact_IIc 163 350 IPR017396 GO:0003700
Pumo3g02156 350 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 291 IPR044810 GO:0003700
Pumo3g02156 350 Pfam WRKY DNA -binding domain 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g02156 350 SMART WRKY_cls 193 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02156 Pumo-Chr3 33337311 33340401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02156 31 350 WRKY Transcription Factor Family AT2G47260 43.020 1.19e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo3g02156 WRKY 3.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02156 - - gmx:100784158 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02156 3 33337311 33340401 Pumo3g02156 3 33337311 33340401 ECH
Pumo5g03476 5 84040703 84042500 Pumo3g02156 3 33337311 33340401 PCT