Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02144 ATGGATACGATCAGTGTTCAGGTGATGAGAAGCTTATCAGATAGTGACTCATCTGCAACATATGCAAGTGAAGAAGATATGGTAATTAAGAAAGGTCCATGGACTGATGAAGAAGATTCTGTTCTGATCAACTATGTCAACGTCCATGGCGAAGGTCACTGGAACTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGACCAAATGTTCGACGTGGGAATATCACCCTTCAAGAACAGCTCTTGATTCTCGAACTCCATTCCCGATGGGGCAATCGGTGGGCTAAAATAGCAGAACAATTGCCTGGGAGAACAGACAATGAGATAAAGAACTATTGGAGGACTCGAGTGGTGAAGCAGGCAAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGGGACGCGGTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCAGATTCAGGCTTCTTGCAGGAATAGTCATTCTTCTTCTTCTTCTTCCTATAGCCTCGATCAAACCACATTGTGCAACACTCAAACCCACAGTGGGGCCAATCCCATGATGTTTTGTGACAACTCAATGGTTTCATCGTACTCAACAGAGGTTGATGTTCAGCCTCCTTCTCTCTCTGATACAAGTACAACTTCTTCATCTTACAATTTAATTGGTGATGGTAGCTGGTCATCGGATAGTGCAGAAAAACAGTGGGACTACTCTGACCTCCAAGCATTTGAACCATGCAATGGTTTTGGTGATGCAGACTTGTGGACCGATGAAAACATGTGGTTCTTGCAGCAGCATCTTGCTGATGAGTTATGA 843 0.4496 MDTISVQVMRSLSDSDSSATYASEEDMVIKKGPWTDEEDSVLINYVNVHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDAVRFVWMPRLMEQIQASCRNSHSSSSSSYSLDQTTLCNTQTHSGANPMMFCDNSMVSSYSTEVDVQPPSLSDTSTTSSSYNLIGDGSWSSDSAEKQWDYSDLQAFEPCNGFGDADLWTDENMWFLQQHLADEL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02144 280 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Pumo3g02144 280 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Pumo3g02144 280 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Pumo3g02144 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 28 216 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo3g02144 280 Gene3D - 28 84 - -
Pumo3g02144 280 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Pumo3g02144 280 Gene3D - 88 129 - -
Pumo3g02144 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 133 IPR017930 -
Pumo3g02144 280 SUPERFAMILY Homeodomain-like 29 125 IPR009057 -
Pumo3g02144 280 FunFam Myb transcription factor 31 83 - -
Pumo3g02144 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 82 IPR017930 -
Pumo3g02144 280 FunFam MYB transcription factor 88 151 - -
Pumo3g02144 280 SMART sant 30 80 IPR001005 -
Pumo3g02144 280 SMART sant 83 131 IPR001005 -
Pumo3g02144 280 CDD SANT 33 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02144 Pumo-Chr3 33167689 33169293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02144 24 276 MYB Transcription Factor Family AT2G47190 48.425 8.34e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g02144 Myb_DNA-binding 1.5e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03488 5 84166569 84168087 Pumo3g02144 3 33167689 33169293 PCT