Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02143 ATGGATGTTAAGAAAGTGAAGGTTCAGCATAGTGAAAACGAGATGGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTCGTCAATTACATCACCACCCACGGTGAAGGTCACTGGAATTCCGTGGCACGATGTGCAGGTCTAAGGAGGAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGCCCCGATGTGCGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTCGACCTTCACTCTCGCTGGGGCAATAGGTGGTCGAAGATTGCTCAGCACCTGCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAGGACCAGAGTGATAAAACAGGCGAAGCAGCTCAAGTGCGATGTCAACAGCAAGCAGTTCAGAGACACGTTGCGTTACGTGTGGATGCCGCGCTTGCTGGAGCGGGTCCAGCCCACATCGCAAACTCACGAGCCCCAAAACCCATGTGGAGTTGGGGGTTTTGGTTTTCTTCACGGTTCAGATTCAGGAACAGAGTGGGCCAAACCGAACCACTCTTACTCGGACTCATCATCCGTGGTTCCTTCCAATTCGGACCATAGCGATTCTTCGGGTCCTATTGAAAAAGGGTCGGATCTGTGGCCAGGTTTCAATAACCAGATTTTGGAACAGGGGAATGGTGGCGGTGAGTCGTTGGAAAGTTTGTGGAATGACGAGAGTATGTGGTTTATGCAACAACTTTCTGATGACCTTCAAATATAA 759 0.4901 MDVKKVKVQHSENEMGLRKGPWTVDEDTILVNYITTHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERVQPTSQTHEPQNPCGVGGFGFLHGSDSGTEWAKPNHSYSDSSSVVPSNSDHSDSSGPIEKGSDLWPGFNNQILEQGNGGGESLESLWNDESMWFMQQLSDDLQI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02143 252 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Pumo3g02143 252 SMART sant 18 68 IPR001005 -
Pumo3g02143 252 SMART sant 71 119 IPR001005 -
Pumo3g02143 252 MobiDBLite consensus disorder prediction 180 203 - -
Pumo3g02143 252 FunFam MYB transcription factor 76 139 - -
Pumo3g02143 252 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Pumo3g02143 252 CDD SANT 76 115 IPR001005 -
Pumo3g02143 252 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Pumo3g02143 252 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Pumo3g02143 252 Gene3D - 19 71 - -
Pumo3g02143 252 MobiDBLite consensus disorder prediction 180 229 - -
Pumo3g02143 252 Gene3D - 76 117 - -
Pumo3g02143 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pumo3g02143 252 FunFam Myb transcription factor 19 71 - -
Pumo3g02143 252 CDD SANT 21 66 IPR001005 -
Pumo3g02143 252 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pumo3g02143 252 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pumo3g02143 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02143 Pumo-Chr3 33137774 33140464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02143 12 244 MYB Transcription Factor Family AT2G47190 51.417 2.76e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g02143 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02143 K09422 - gmx:778065 363.999