Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02129 ATGGAAGCTAGATTTGGAGCTGAGGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGAAAGAGGTCCTCAGAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATCGCAAGCCGGCTGAATCCGGTGCCAGTGGATGGTGTGGGAGTTGGACAGCAGTTTTTCCCTCTCGGGTCTGGGATCCCGGTGGCTGGAGGTCCTTCCAACAGTTCTTCCACCTCTGAGGAAGTAGATCCTAGGGATCCCAAGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGGTTGAATGAGGAAGCGGGTACTCTTAGTTTAAAGCTCGGTGGGCAGGCTTCTACACTGGTGGATAGAGAAGTTGCGAGCTGGGACGGTACGAATGGGAAGAAAAGTAGAGTGTCTGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGACATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAGTTTGATGAAGGAAAGAGAAGTTGCCGAAGACGCTTGGCAGGGCATAATAAACGAAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGAATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAATCAGAACGGTGAGCAAGGGGGCAAGAACATATCTAACCTTTTGCGAGAACCAGAGAATTTGTTGAGAGAAGGGGATTCATCAAGGAAGTCAGAGATGGTGTCAACTTTGTTCTCCAATGGTTCTCAAGGCTCTCCGACTGGACAACATGAAACTGTATCTATGGCTAAAATGCAGCAACAAGTGATGCATGCACATGATGCTAGGGCTACTGATCAGCAAATTACGTCTTCTATAAAGCCCAGCATGTCAAACAGTCCTCCGGCCTACTCAGAAGCCAGAGACAGTACTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCTGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCCCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCATCTGCTCAGTCTCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTATTCGGTAAAGAGCCAAATGATTTTCCTCTTGTACTCAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTCGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCAGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAAATGGCCTTCATTTTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCCGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATATGTCAATGGATCAATGCTCCAAAGAGCCTGATGAACTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGTAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATCTGTACACTTGAGCCTCTTCTAGAATTAGGTGAAACTGATCCAGATATTGAAGGCACTGGAAAAATTAAAGCCAAGAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAGGCCAGTTGAAATTAAGGATGGTTCACTTGAACTCTAGTGTGGATCTCTTTCCAATGAAACGGTTCAAGTGGCTTATTGAGTTTTCCATGGATCATGACTGGTGTGCAGCAGTGAGAAAACTGTTGAACCTACTGCTTGATGGAACTGTAAATACAGGAGATCATCCTTCCCTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTGAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTTTTGAGATATGTTCCTGATAATATTTCTGATAAACTAGGACCTGAAGACAAGGCACTGGTTGATGGAGAGAATCAGACCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAAGATGTACTCGATGCCTTGACTAATGATCCTTGCATGGTGGGAATTGAAGCATGGAAAAATGCTCGTGACAGCACAGGCTCCACACCTGAGGACTATGCACGTTTACGTGGCCATTATGCTTACATTCACCTAGTGCAGAAGAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAACACGACAGAGAGCAATACAAACCAGAAGCAGAATGAGTCATCCACTAGCTTTGAGATTGGAAAGGCTGAAGTAAGGCGTGGCCAAGGGCACTGCAAACTTTGTGACACCAAAATTTCTTGCAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCAATGCTCTCAATGGTGGCCATAGCCGCAGTCTGTGTCTGTGTTGCCCTTCTGTTTAAAAGCTCACCCGAAGTCATATGTATGTTCCGACCATTCAGGTGGGAAAATTTGGACTTTGGAACAAGCTAA 3036 0.4407 MEARFGAEAYHFYGVGASSDLRGVGKRSSEWDLNDWRWDGDLFIASRLNPVPVDGVGVGQQFFPLGSGIPVAGGPSNSSSTSEEVDPRDPKGNKEGDKKRRVIVLEDDGLNEEAGTLSLKLGGQASTLVDREVASWDGTNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSSYLLISLLKILSNMNSDRSDQTTDQDLLTHILRSLANQNGEQGGKNISNLLREPENLLREGDSSRKSEMVSTLFSNGSQGSPTGQHETVSMAKMQQQVMHAHDARATDQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEASWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDAHMSMDQCSKEPDELQCIQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLELGETDPDIEGTGKIKAKNQAMDFIHEMGWLLHRGQLKLRMVHLNSSVDLFPMKRFKWLIEFSMDHDWCAAVRKLLNLLLDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKQLVELLLRYVPDNISDKLGPEDKALVDGENQTFLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGAAHVVVEIPSNTTESNTNQKQNESSTSFEIGKAEVRRGQGHCKLCDTKISCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWENLDFGTS 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 916 936 - -
Pumo3g02129 1011 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 898 IPR044817 GO:0003677
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 306 334 - -
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 84 102 - -
Pumo3g02129 1011 Gene3D - 747 942 IPR036770 -
Pumo3g02129 1011 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Pumo3g02129 1011 Pfam SBP domain 156 229 IPR004333 GO:0003677
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 221 242 - -
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 314 334 - -
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 69 102 - -
Pumo3g02129 1011 SUPERFAMILY Ankyrin repeat 780 897 IPR036770 -
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 351 381 - -
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 916 935 - -
Pumo3g02129 1011 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Pumo3g02129 1011 MobiDBLite consensus disorder prediction 423 457 - -
Pumo3g02129 1011 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Pumo3g02129 1011 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02129 Pumo-Chr3 33003474 33011101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02129 1 1011 SBP-box Gene Family AT3G60030 54.280 0.0 975
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pumo3g02129 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02129 - - gmx:100809806 1897.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02129 3 33003474 33011101 Pumo3g02129 3 33003474 33011101 ECH