Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02113 ATGGAAAACCACCACCAAATGCAACAACCAAACCGTGAATTGACCTTACTAAGATCCACCGATTTCCTCCGCCAGAATCTCAATCTAGGTCCGAGGACCGTCAACACCGGAGAACATGAAGATCCTTCCATCAAAGAAGTGGATTTTTTCTTATCAAGTTCACCGCCAAAGAATAGTGACACTGATAACTCAAATAATAATATTCGTCAAGAGGACCCACGTCATCTTCAAACGAACATGGCTAAAGACGATAGATCACCCACTCTTTTCAATGATCAGCTCGTAAACACCGCTCTGAATCTAAGTCCGAGTGCTGGGTTGTCAAGATCAGCAGCAAATGATGAAAGTCTTAAAGCTCTGTTGAATACACTTCAAAGGGAATCATTGAGACTACAAGAAGAGAATTGCAAGTTGAGAACGATGTTGGATCAAATCACCAAAAACTACCAACAATTACAGTTGTTCATTGCTTTGCAGAAGCAGAAGACAAAGCCGTGTCAGAAGGTGGAGACAAATGGGATTATGTGTGGTCAACATTTATTGGACCCACGACCATGCACCAAATTAGACGCTCAAGTTGCGTCATTTCCTGATGATAAATCTGGTCATGGTCAAGAGGGTCATCCTGATCCTGTAGAAGATTTTCTTGAACAGTCGTCCTCACAGAGTTGGGGGTCATCCAAGAGTCCCAAGTTTGAAGAATCCAAGCCTAGTGAGCTTCCTTTCAAAAAAACCAGGGTTTCCGTGCGTGCCATATCAGAAGCTCCTATGATTAGCGATGGATGTCAATGGAGGAAATATGGACAAAAAATAGCCAAGGGTAATCCTTGTCCCCGTGCCTATTATCGTTGCACTATGGCCGTAGGATGTCCGGTTCGCAAACAGGTGCAAAGATGTATAGATGACAAGACGGTGTTGATAACCACCTACGAAGGTAATCATAACCATCCTCTTCCACCCTCAGCCACAGTGATGGCCAATTCTACCTCAGCAGCTGCAGCTATGTTCTTATCTTCTTCAAGTTCAACATCTAATAACGAAGCACTAAGTAACACTGTAGGAGTATTCTCTTCCATGCCCTACATCCCAATGGCAACCCTCTCAACCTCTGCACCATTTCCCACTATCACCCTTGACATGACCACCAACCCTATGCAACTGCATCGAGATCCCTCCTCTGCCCTAACATCCCCTCTTCCATTGCATGCAACTACTTTTCCTCAGCTACGAGGACACCCTATCATCTTCCCCCACAAGATGCCACATCCGTTAGGCCAACAACAACAACAACCTTTGTTTATGACAGAGCCGATGAGTGCAGCTATTGCTTCAAATCCAAATTTCACTATAGCATTAGCAACAGCGATCTCATCAATCATTGGAGCTCCTAGAGGCAATGATGGAAATAACAACAATAGTAGCAATAGTGGAAGTGTTCTTCCCCTTAATGGGACATCTATGTTGCCTGGATCCACTAGCTCGTATACATGA 1491 0.442 MENHHQMQQPNRELTLLRSTDFLRQNLNLGPRTVNTGEHEDPSIKEVDFFLSSSPPKNSDTDNSNNNIRQEDPRHLQTNMAKDDRSPTLFNDQLVNTALNLSPSAGLSRSAANDESLKALLNTLQRESLRLQEENCKLRTMLDQITKNYQQLQLFIALQKQKTKPCQKVETNGIMCGQHLLDPRPCTKLDAQVASFPDDKSGHGQEGHPDPVEDFLEQSSSQSWGSSKSPKFEESKPSELPFKKTRVSVRAISEAPMISDGCQWRKYGQKIAKGNPCPRAYYRCTMAVGCPVRKQVQRCIDDKTVLITTYEGNHNHPLPPSATVMANSTSAAAAMFLSSSSSTSNNEALSNTVGVFSSMPYIPMATLSTSAPFPTITLDMTTNPMQLHRDPSSALTSPLPLHATTFPQLRGHPIIFPHKMPHPLGQQQQQPLFMTEPMSAAIASNPNFTIALATAISSIIGAPRGNDGNNNNSSNSGSVLPLNGTSMLPGSTSSYT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02113 496 Coils Coil 114 137 - -
Pumo3g02113 496 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 110 475 IPR044810 GO:0003700
Pumo3g02113 496 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g02113 496 MobiDBLite consensus disorder prediction 49 85 - -
Pumo3g02113 496 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g02113 496 SUPERFAMILY WRKY DNA-binding domain 251 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pumo3g02113 496 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g02113 496 FunFam probable WRKY transcription factor 31 243 320 - -
Pumo3g02113 496 MobiDBLite consensus disorder prediction 52 74 - -
Pumo3g02113 496 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pumo3g02113 496 MobiDBLite consensus disorder prediction 467 496 - -
Pumo3g02113 496 MobiDBLite consensus disorder prediction 215 231 - -
Pumo3g02113 496 MobiDBLite consensus disorder prediction 194 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02113 Pumo-Chr3 32831555 32837598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02113 124 460 WRKY Transcription Factor Family AT4G04450 41.026 1.25e-73 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pumo3g02113 WRKY 7.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02113 - - gmx:100785933 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02113 3 32831555 32837598 Pumo3g02113 3 32831555 32837598 ECH
Pumo5g03529 5 84531285 84534818 Pumo3g02113 3 32831555 32837598 PCT