Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02111 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCATCTATCTCCAGCTGCAGAAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAAAATAGTCAAGGCCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCCGCTACTCAACATGTTGGCTCTTCTAGTTCAGGGGGGCACTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGTGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCGATTGGCAGAAAACTCAACTTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGACCCTTGAACAGATGTTTGACACTACCATTCTGTGGGGAACTGAGATGGACGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCAGCTGTAAAGAGGTTGAAGATCACAAGGGTCGAGACATTTGGATGA 528 0.4583 MGKASSSSSSSISSCRNPSNSTASSLTHQNSQGLRTDLRLGLSISATQHVGSSSSGGHWQPMQPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02111 175 SUPERFAMILY CAD & PB1 domains 79 169 - -
Pumo3g02111 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 35 171 IPR003311 GO:0005634|GO:0006355
Pumo3g02111 175 Gene3D - 77 174 - -
Pumo3g02111 175 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Pumo3g02111 175 Pfam AUX/IAA family 75 170 IPR033389 -
Pumo3g02111 175 ProSiteProfiles PB1 domain profile. 83 173 IPR000270 GO:0005515
Pumo3g02111 175 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02111 Pumo-Chr3 32803023 32804470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02111 87 168 B3 DNA Binding Superfamily AT4G23980 40.244 4.03e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo3g02111 AUX_IAA 1.9e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02111 K14484 - gmx:100781660 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02111 3 32803023 32804470 Pumo3g02111 3 32803023 32804470 ECH
Pumo5g03531 5 84562041 84564429 Pumo3g02111 3 32803023 32804470 PCT