Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02108 ATGGCTGAGAAGATGTCTGATTCCACCAAACCAGGGATGACTAGAAGCTCCTCCTATTTAGATTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGGAAATGGTCAACTTCACGTGCAGCAAGGAGGTTCATCATCAAGTGTCCTCACACGAATGACTCCCTCGTGCGAAGGGTATTCAATAAAGGCAATTGATGAAGGTGCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCACTATACTCCCTCATGGACTTCCCAGTTCAAAGGGACTCTGCCATGGACAATTCACAACCAAATTCTCACCAAAGCAATGACCAAAGTTCTTGTCATCTTGCTTTAGAACAACGAGTAGAGGAGATTAAGACTAGTAAGTCTGCAAAGGCTGATTCTAGCAGCAAAGGTCCTGATGATTCCTTAGTGATAAACTCACCTAAAGGATCACAAGGACTTGAAAGGCAAAACCCTTTGATTTCTGATGCATCAAACATGGTTCCAAGAAGTGAGGAAACACTCCCTGATGAGCAATCTGAAGCTGTTGTTGGTCATAACAGTGCTCATAGTAGATCTCGTGTTAACCGAACCTCAAGCTCAGTAGGAGTTAGAGCAAAGGGAAAAGCTGATGCTAAAAAATACTGTGATGAAGCCTTGTTAGAATCTTCTTCTCTATGCTCCCTTGGAGCCTCAAATAACAGAAACGTTTGTAGCAGGAAACATGATGACATCGATGACTCAACGTATTTAAGCGATAATGATGAAGAACCAGAAGATGTAGTGAATGAAAAGCTTGTTCGGGAAGGCAACGGAGTCAAGAGAAGTAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAACGAAGAGATAAAATCAACAAGAGGATGCGTATATTAAAGGAGCTCATACCCAATTGCAATAAGACGGACAAAGCTTCAATGCTTGATGATGCCATCGAATATCTTAAGACCCTAAAGCTTCAGTTACAGATTATGTCAATGGGTGCTGGATTTTGTATGCCTTTTATGATGCTACCTAATGCTGCTCATCATATGATCAACACACCCCATTTACATCAGTTAATGGGAGTTGGAATGGGGTTCAGGGCAGGCACAGCCATGCCTTGCAGCCTCCCTCAGTTCCCTATTACACCTTTGCCTGCTATCACTGACAACAGAGTTCACATGCTTGGTTTCCCCAACCAAGTGCCACCCATGCCAATTTCTCATGCACCTTTCATTCCAATGCTTGGAAATCCTTCCACACAAACCCCTCTTGCAACTGGCACAGCTATCAACCTGGCAGAAAACCCTGCTTCTTCCCAGTTAACTACTCTACTGGCCTCAGTCCCCAAGAATTCATATCTTAGTGGACAAGCTGAATATGCAACAAAGCAAGCACTGAATCAGGTTTCTCTAAACCGCTAG 1422 0.4325 MAEKMSDSTKPGMTRSSSYLDSIYGKGSLELVWGNGQLHVQQGGSSSSVLTRMTPSCEGYSIKAIDEGAFNAKSARLSSLYSLMDFPVQRDSAMDNSQPNSHQSNDQSSCHLALEQRVEEIKTSKSAKADSSSKGPDDSLVINSPKGSQGLERQNPLISDASNMVPRSEETLPDEQSEAVVGHNSAHSRSRVNRTSSSVGVRAKGKADAKKYCDEALLESSSLCSLGASNNRNVCSRKHDDIDDSTYLSDNDEEPEDVVNEKLVREGNGVKRSRNAEVHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLKTLKLQLQIMSMGAGFCMPFMMLPNAAHHMINTPHLHQLMGVGMGFRAGTAMPCSLPQFPITPLPAITDNRVHMLGFPNQVPPMPISHAPFIPMLGNPSTQTPLATGTAINLAENPASSQLTTLLASVPKNSYLSGQAEYATKQALNQVSLNR 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02108 473 CDD bHLH_AtPIF_like 274 336 IPR047265 -
Pumo3g02108 473 MobiDBLite consensus disorder prediction 91 202 - -
Pumo3g02108 473 Gene3D - 270 331 IPR036638 GO:0046983
Pumo3g02108 473 PANTHER TRANSCRIPTION FACTOR PIF3 102 452 IPR044273 GO:0003700|GO:0006355
Pumo3g02108 473 MobiDBLite consensus disorder prediction 113 127 - -
Pumo3g02108 473 MobiDBLite consensus disorder prediction 181 200 - -
Pumo3g02108 473 FunFam Basic helix-loop-helix transcription factor 269 332 - -
Pumo3g02108 473 MobiDBLite consensus disorder prediction 91 112 - -
Pumo3g02108 473 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 272 335 IPR036638 GO:0046983
Pumo3g02108 473 SMART finulus 280 329 IPR011598 GO:0046983
Pumo3g02108 473 MobiDBLite consensus disorder prediction 136 170 - -
Pumo3g02108 473 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 274 323 IPR011598 GO:0046983
Pumo3g02108 473 Pfam Helix-loop-helix DNA-binding domain 278 323 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02108 Pumo-Chr3 32778245 32780565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02108 215 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 44.700 2.71e-37 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02108 HLH 1.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02108 K12126 - gmx:100818543 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02108 3 32778245 32780565 Pumo3g02108 3 32778245 32780565 ECH
Pumo5g03533 5 84584242 84585838 Pumo3g02108 3 32778245 32780565 PCT