Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02106 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTTTGAGGCATATTACAAAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTACTTGAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAACCTTATCATTGAACTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCGGCACAGTTGCCGGGGAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGCATAGACCCTGTCACACATAAACCACTATCTGAGGTTGAGAATGGAGGGGACAATGGTAGGAGCCAAGAGAAAGCACCAGAAGTGTCCAATGAACTGAACCTCCTGAAATCAGAGAGCTCCAAGTCAGATTCAGCTTCCTATGAGCATAGAACATCAATTTCTCCAAAAGCCTATGCACCTGAGATGGATGGTTCTTGCAGCTCCAAGATTGAAAGCAATTTTGTAACCAACAACTGCTACAGCAAAGACTTGTTCCTAGACAGGTTTATGAGTAGTAGCCGCCAAGAGAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGGAATTTTCCAATTCAGATGAGTTATGCAACCAATGACTGTCTCCCTAATGATTCAAACTCTGGTCATTGGTTAAGCCAAACTGGAAGGCCTTTTGATATGAACTCTGAATTTCCTTTCAATGCTGCCACTTCTATTAATCCTACACCTACAACAACCAACTTGTTTCTTCCTAATTCTTTTTGCTACAAGCCTTCACTTGCTGTTCCCACTGACAATGTTTCCACAGCCTATGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAATAGCAATAGCAGCATTAGGAGTAACAGCAGCACAGAGTTGAGAAGTAGCAGCCCCTTGAACATCTTTTCTTCTTGGGGGTTGGCAGATTGTAGCACCTCTACTACTAAAGAGGCACAAATTCATATGATGGAGAATCATACAGAAGAAGCTAAGTGGGATGAATACCTTCATAACCCAATATCAATGCTGGCTTCTATACAAAACCAAGCTCCTGAGTCTTTATGCAATGAGATAAAAACTTCCATGCATTTGGTACCTGATACTTTAGGGGCTATGTTGCCTCATAGTCATGCCAAGCAGCAAGAACCCTCTCAAACTTCTAGTTTCTTTTCCAAGGACATCCAGAAGCTCAGGGCAGCCTTTGGACACATGTAA 1329 0.4334 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEVENGGDNGRSQEKAPEVSNELNLLKSESSKSDSASYEHRTSISPKAYAPEMDGSCSSKIESNFVTNNCYSKDLFLDRFMSSSRQESYTTSCQPSDLMGNFPIQMSYATNDCLPNDSNSGHWLSQTGRPFDMNSEFPFNAATSINPTPTTTNLFLPNSFCYKPSLAVPTDNVSTAYGSHYWEASASNNSNSSIRSNSSTELRSSSPLNIFSSWGLADCSTSTTKEAQIHMMENHTEEAKWDEYLHNPISMLASIQNQAPESLCNEIKTSMHLVPDTLGAMLPHSHAKQQEPSQTSSFFSKDIQKLRAAFGHM 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02106 442 Gene3D - 68 135 - -
Pumo3g02106 442 Gene3D - 11 67 - -
Pumo3g02106 442 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo3g02106 442 PANTHER MYB DOMAIN PROTEIN 55 1 355 - -
Pumo3g02106 442 SMART sant 13 63 IPR001005 -
Pumo3g02106 442 SMART sant 66 114 IPR001005 -
Pumo3g02106 442 CDD SANT 17 61 IPR001005 -
Pumo3g02106 442 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo3g02106 442 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo3g02106 442 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo3g02106 442 FunFam MYB transcription factor 68 140 - -
Pumo3g02106 442 CDD SANT 69 109 IPR001005 -
Pumo3g02106 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo3g02106 442 MobiDBLite consensus disorder prediction 122 150 - -
Pumo3g02106 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo3g02106 442 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo3g02106 442 FunFam Myb transcription factor 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02106 Pumo-Chr3 32736102 32738494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02106 1 441 MYB Transcription Factor Family AT1G09540 42.697 9.75e-94 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g02106 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02106 K09422 - gmx:100782199 767.303