Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02090 ATGGCTTCTTCCATCATAGGTGTCTCTTCTTCCATTTCCACATACAAAACCCCCTCTTTCCAACTCCTCAAAAGACCAACCGCCACAACCACCTCCGTTTCCTTCAACACCCTTCCCCGTAACCGTAACCGTAACGCCACACTCTCTTCCGTTCCTTCCGCCATTGCCACCCCCACCGAACAACCCTTCAAGGGTTTAACTTTGGACGATGTTAGTATTGGCTATGACTTCGAAGCCAACGTCAGCGACCACGAACTCGACATTTCCAAGTTGGGTTTACCTTCGTCCCTCGTCCACTCCCTCCAAAAACGTGGCATCACCAGTCTTTTCCCCATTCAGAGAGCTGTGTTAGTGCCTGCACTAGAAGGTAGGGATATCATTGCTCGTGCAAAGACCGGAACTGGCAAGACATTAGCATTCGGAATTCCAATTCTTAAAGGCCTCACTGATGATGATGAACAAACTCCTCACAGGCGGTCTGGGAGGCTTCCTAAAGCTTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTTGACAAAGAGATACAAGAGTCTGCACCTTACCTTAACACAGTTTGTGTTTATGGTGGTGTTTCTTATGTAACACAGCAGAGTGCGCTTTCGCGCGGTGTTGATGTGGTGGTTGGAACACCGGGTAGAATAATTGACCTAGTGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAGGTCATTTTAGATAAGCTCCCGGCTCAGCACCAGACCATGCTTTTTTCTGCAACCATGCCCGGTTGGGTCAAGAAACTGTCCAGAAAGCATTTGAACAATCCATTGACAATTGATTTGGTTGGTGAACAAGAGGAGAAGCTTGCTGAAGGGATCAAGCTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGACAGCTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTTTTCACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACAAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTACTTGTTGCCACTGACGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGAAAAGAGGGTACGGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCATCTGCTGAGCAAGTTGTTGCTACACTTAATAGAGTTCATCCTGAATCTGTTGAATTTTTCACTGCAACTGCACAAAAACTGGTTGAAGAACAAGGAGCAAGGGCCCTTGCAGCTGCTCTAGCACAGATGAGTGGATTCTCTCGACCTCCATCATGTCGGTCTCTTATCAATCATGAGCAGGGATGGATTACATTGCAACTGACTCGAGATCCAGATACTTCTGGAAGATTTTTTTCTGCAAGATCTGTCACTGGGTTTCTTTCGGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTCAAGGAGCTGTTTTTGATCTTCCAGAGGAAATAGCTAAAGAGTTACTCAATAAGGATCTGCCATCTGGAAACACTATTTCCAAAATCACCAAGTTACCTCCTTTGCAAGATGATGAACCTGCAAGTGATTTCTATGGGAAGTTTTCCGACAGAGATAGAAGTAACCGAAGAGGTTCTAGGGATCAGAGAGGTTTTAGAAGTTCACGAGGGTGGGAAGGAGGCCAAGACTCTGATGATGAGTTTGGACGAGGTGGTAGAAGTTTCAGATCTGGCAACAACAGGTCTCGAATGGGAAAAAGCAGCGGGGATGACTGGCTAATTGGAGATAGACGATCAAGCAGGTTTTCATCATCCAACAGAGGCGGCGGGCATGGAGGGGCCTGTTTTAATTGTGGAAGACCTGGCCATCGGGCATCAGATTGTCGCCAAAAACGAGTCTTTTTCTAG 2184 0.4547 MASSIIGVSSSISTYKTPSFQLLKRPTATTTSVSFNTLPRNRNRNATLSSVPSAIATPTEQPFKGLTLDDVSIGYDFEANVSDHELDISKLGLPSSLVHSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPILKGLTDDDEQTPHRRSGRLPKALVLAPTRELAKQVDKEIQESAPYLNTVCVYGGVSYVTQQSALSRGVDVVVGTPGRIIDLVNGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDKLPAQHQTMLFSATMPGWVKKLSRKHLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRTALSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVEFFTATAQKLVEEQGARALAAALAQMSGFSRPPSCRSLINHEQGWITLQLTRDPDTSGRFFSARSVTGFLSDVYSPAADEVGKIHLIADERVQGAVFDLPEEIAKELLNKDLPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSRDQRGFRSSRGWEGGQDSDDEFGRGGRSFRSGNNRSRMGKSSGDDWLIGDRRSSRFSSSNRGGGHGGACFNCGRPGHRASDCRQKRVFF 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02090 727 FunFam ATP-dependent RNA helicase RhlE 78 297 - -
Pumo3g02090 727 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 84 671 - -
Pumo3g02090 727 MobiDBLite consensus disorder prediction 622 664 - -
Pumo3g02090 727 SMART helicmild6 348 428 IPR001650 -
Pumo3g02090 727 FunFam Nucleolar RNA helicase II 316 506 - -
Pumo3g02090 727 ProSiteProfiles Zinc finger CCHC-type profile. 707 722 IPR001878 GO:0003676|GO:0008270
Pumo3g02090 727 Pfam DEAD/DEAH box helicase 110 283 IPR011545 GO:0003676|GO:0005524
Pumo3g02090 727 CDD DEADc 97 295 - -
Pumo3g02090 727 MobiDBLite consensus disorder prediction 601 715 - -
Pumo3g02090 727 SMART c2hcfinal6 706 722 IPR001878 GO:0003676|GO:0008270
Pumo3g02090 727 CDD GUCT_Hera 523 602 - -
Pumo3g02090 727 Pfam Zinc knuckle 706 722 IPR001878 GO:0003676|GO:0008270
Pumo3g02090 727 Gene3D - 311 514 IPR027417 -
Pumo3g02090 727 SUPERFAMILY Retrovirus zinc finger-like domains 687 723 IPR036875 GO:0003676|GO:0008270
Pumo3g02090 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 468 IPR001650 -
Pumo3g02090 727 Pfam GUCT (NUC152) domain 515 615 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pumo3g02090 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 449 IPR027417 -
Pumo3g02090 727 CDD SF2_C_DEAD 320 437 - -
Pumo3g02090 727 Gene3D - 684 725 - -
Pumo3g02090 727 SMART ultradead3 105 311 IPR014001 -
Pumo3g02090 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 117 294 IPR014001 -
Pumo3g02090 727 Gene3D - 87 298 IPR027417 -
Pumo3g02090 727 Pfam Helicase conserved C-terminal domain 321 428 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02090 Pumo-Chr3 32609609 32615083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02090 91 450 Eukaryotic Initiation Factors Gene Family AT1G72730 36.164 1.44e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02090 - - gmx:100815040 1252.27