Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02080 ATGGGAAGACACTCTTGCTGCTACAAACAGAAGTTACGGAAAGGCCTTTGGTCTCCGGAGGAAGATGAGAAGCTTCTAAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTCCCCAAACTTGCTGGTTTGCAGAGGTGTGGGAAGAGCTGCAGGTTGAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGAGCATTCTCACAGCAGGAAGAGAACATGATTATTGAACTTCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAGTTACCGGGAAGAACTGACAATGAGATTAAAAACCTATGGAACTCGTGCCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACATGCCACCCTCAACCGACAAAAGCAATCAGAAAGCCTCTGTGGGATCCAATGAAGTAGTGAGTTTGGTTGATCAGCCACCAAAACCCATGCCTAATTCTTCATCAGAGAGATACCCTCTTGAAGTTTCCACTAGTTCCACCCAGGAACTGTTCCTAGATAATAGGTTTGGTACCACCACCTGCCATGACAACAACAACAACAACAACACTTGCAGACCCTCTGATGTGGTAGGATCATACTTCTCCTTCCAGCACTTGAACTATGGAACAACCCTCTCTGCAAACCCCAACACCTCTCTTTGTTTCATTCCACCCTCCACTTCTTCAGACCTTAACAATTCCACCATAACCTCCTCTATGCTCCATTCAATTTTCCCAACTCCAACACATGTTAAGCTCCAATCTAATAACAATCCTTCAATTTCCTCTGATGGGGTTCAAAACTGGGAAACCAATAACTTGAGTAACAGCAACAACAACACAAACAAAAACAATGGGAGTATGCAGTTACAAAGCAGCACAAACTTCCTTGACAACACGTGGGGGGTGGCAGAGTCTATGAAGGTTAACATTAACAAAGATGCTCAACAAGTGCCCCTACAAGCAGAACAAGAAGATCTAAAATGGTCTGAGTATCTTAACAGCCCGTTTATTCTGGGAAACACAACGCAGAATAATCAAATTCAAAACTCTCAATCTATCTACAGTGAGGTTAAACCAGAAACAGGTTTCATAACAGACGAGTCATGTACTAGTTGGCACCATCAGGCACCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAGAGATTTTCAGTGACTTTCGGACAAACCATGTAA 1257 0.4407 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMPPSTDKSNQKASVGSNEVVSLVDQPPKPMPNSSSERYPLEVSTSSTQELFLDNRFGTTTCHDNNNNNNTCRPSDVVGSYFSFQHLNYGTTLSANPNTSLCFIPPSTSSDLNNSTITSSMLHSIFPTPTHVKLQSNNNPSISSDGVQNWETNNLSNSNNNTNKNNGSMQLQSSTNFLDNTWGVAESMKVNINKDAQQVPLQAEQEDLKWSEYLNSPFILGNTTQNNQIQNSQSIYSEVKPETGFITDESCTSWHHQAPAFQLSDIYSKDLQRFSVTFGQTM 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02080 418 FunFam MYB transcription factor 68 140 - -
Pumo3g02080 418 Gene3D - 11 67 - -
Pumo3g02080 418 SMART sant 66 114 IPR001005 -
Pumo3g02080 418 SMART sant 13 63 IPR001005 -
Pumo3g02080 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Pumo3g02080 418 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo3g02080 418 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo3g02080 418 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo3g02080 418 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pumo3g02080 418 CDD SANT 17 61 IPR001005 -
Pumo3g02080 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Pumo3g02080 418 MobiDBLite consensus disorder prediction 286 308 - -
Pumo3g02080 418 MobiDBLite consensus disorder prediction 119 142 - -
Pumo3g02080 418 MobiDBLite consensus disorder prediction 143 157 - -
Pumo3g02080 418 CDD SANT 69 109 IPR001005 -
Pumo3g02080 418 PANTHER MYB DOMAIN PROTEIN 55 1 324 - -
Pumo3g02080 418 FunFam Myb transcription factor 11 67 - -
Pumo3g02080 418 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo3g02080 418 MobiDBLite consensus disorder prediction 119 177 - -
Pumo3g02080 418 Gene3D - 68 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02080 Pumo-Chr3 32496796 32499006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02080 1 418 MYB Transcription Factor Family AT1G09540 48.402 5.46e-113 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo3g02080 Myb_DNA-binding 2.8e-15 CL0123