Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02078 ATGCCTTTGTATGAGTTATACCGGCTGGCCAGAGAGAAGCTTGGTAAAGAGACTACAAGCACACGTGCACCTGATCAATGTTCCTCGCCTGAGAATGATTTTTTTGAGCTAGTTTGGGAGAATGGTCAGATTTCGAGCCAGGGTCAGTCCAGTAGAGTTAGGAGTCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCTTCTCACAGTCCAAAGGGTAGAGATAAAGATGTTGGATATGGTAACAACACAAGGATTGGAAAATTTGGGGATTTAGACTCTGGATTGAATGAAATTCCAATGTCGGTGCCATCCCGTGAAGTGGATTTCTGTCAAGATGAAGATGTGTTACCTTGGTTGGATTATACATCAATGGATGGTTCCTTGCAGCATGAATATGGTTCTGATTTCCTCCCTGCCTCAAATAGTTTTACTCTGTTGGATAAAAAAAGTAATGGCAGTATGGCGTTTAGGGATTCTCATAAAACTTCTGAAGAACAAGGGAATGTTTTCAAGGGTTCTTCAGCTGAACAGGTTGAGACTGCCAGACCAAAAGCTAGCACCAGTCAGTTATATCCCCCACCATTGCATCAGTGTCAAACATCTTTTGTATCTTCTAGATCCAGAGCATCGGATATAACTGAAAATAACAATACGAGTAATGCAGACCAGGGTGCGTCTTATGGCAAAATTACTCATATTCTATCTTCCTCAAGTGATTTTTCTAACTCAAAGGTGCAGAAGCATGATCCACCTATGACTAGCAATGGTTCCAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTATGGTAAGAGCTAATCTTCAGAACATTGGCCTGAAGTCTGGTTTGTCTTTAGCAAGATCAGACAGTATGGAAATTAAGAATAAAGGTGTTGCTGCAACTAACAGCAATCCTCCTGAATCAATTCTTGTTGATTCAAGTGGTGAATGTTTGAAGGAACCAACCATGCAATGCCAGCAGGTTGTGGAGCAATCCAAGGCTGATGTGAACTCTTTGCAGCCAAAATCTGTTGAACAGAATGCTGTGCCTTCTAAGCAGTCGGAGCCTGCTTGTAAAGAGAGTGCCACTAAGATTGATCAAACTCCCAATCAAGTTCTTGGTGACAGTGGTGCTAAAGGACAGACAGCTGCTGAAAAAAGTATGGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGTTCAGACGAACCAAATCAAGATTTGAAGCGAAAAAGAAAAGACACTGATGACTCTGAGTGCCATAGTGAAGATGTTGAGGAAGAATCAGTGGGTGCTAAAAAGGCAGCTGGTGGGCGAGGAGTTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATCAATCTGAAAGGAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAGGAACTCATACCAAATTGCAATAAGGTGGATAAAGCTTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGTCTCCTATGATGTTACCTGCGGGAATGCAGCACATGCTTGCACCACATATGGCTCCATTTTCACCTATGGGTGTTGGCATGCATATGGGATATGGTATGGGTTATGGAATGGGAATGCCTGACATGAATGGTGGATCTTCAAGATTCCCTATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCGCATATGTCTGGACCTACTGCTTTACATGGGATGGCCAGATCAAATCCTCCAGGGTTTGGGCTTCATGGACAAGGACATCCCATGCCAATGCCTCGAGCTCCTGTGTTTCCTTTTTCAGGAAGACCTCTCATGAATTCACCAGCTCATGGACTACATGCCTGTGGATCATCAGGACTTGTTGAAACCGTGGATTCAGCTTCTGCGTCTGGCTTAAAGGATCAAATGCCAAATGTTGATCCACAAGTTAAGCAAGGCACTGGTGGATGTGACTCAAAAAGTCAGATGCCTACACAGTGTGAAGCAGCAGCTGTTGGATTTGAGCAATCTGCTTTGGCTCATAGTAGCGGTCATGCATCCGAGGCTAATGACAATGGAGCTGTTAAACCTGGTCCTGGCAGATAA 2166 0.4418 MPLYELYRLAREKLGKETTSTRAPDQCSSPENDFFELVWENGQISSQGQSSRVRSPSCRSLPSHCLPSHSPKGRDKDVGYGNNTRIGKFGDLDSGLNEIPMSVPSREVDFCQDEDVLPWLDYTSMDGSLQHEYGSDFLPASNSFTLLDKKSNGSMAFRDSHKTSEEQGNVFKGSSAEQVETARPKASTSQLYPPPLHQCQTSFVSSRSRASDITENNNTSNADQGASYGKITHILSSSSDFSNSKVQKHDPPMTSNGSSSTIMNFSHFARPAAMVRANLQNIGLKSGLSLARSDSMEIKNKGVAATNSNPPESILVDSSGECLKEPTMQCQQVVEQSKADVNSLQPKSVEQNAVPSKQSEPACKESATKIDQTPNQVLGDSGAKGQTAAEKSMEPAVASSSVCSGNGADRGSDEPNQDLKRKRKDTDDSECHSEDVEEESVGAKKAAGGRGVTGSKRSRAAEVHNQSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMSPMMLPAGMQHMLAPHMAPFSPMGVGMHMGYGMGYGMGMPDMNGGSSRFPMIQVPQMQGTHIPVAHMSGPTALHGMARSNPPGFGLHGQGHPMPMPRAPVFPFSGRPLMNSPAHGLHACGSSGLVETVDSASASGLKDQMPNVDPQVKQGTGGCDSKSQMPTQCEAAAVGFEQSALAHSSGHASEANDNGAVKPGPGR 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02078 721 CDD bHLH_AtPIF_like 459 521 IPR047265 -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 167 226 - -
Pumo3g02078 721 PANTHER TRANSCRIPTION FACTOR PIF3 1 683 IPR044273 GO:0003700|GO:0006355
Pumo3g02078 721 MobiDBLite consensus disorder prediction 45 64 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 45 81 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 339 382 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 657 682 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 239 259 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 339 475 - -
Pumo3g02078 721 Coils Coil 465 485 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 413 444 - -
Pumo3g02078 721 Gene3D - 454 517 IPR036638 GO:0046983
Pumo3g02078 721 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Pumo3g02078 721 MobiDBLite consensus disorder prediction 461 475 - -
Pumo3g02078 721 FunFam Basic helix-loop-helix transcription factor 454 517 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 393 411 - -
Pumo3g02078 721 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 519 IPR036638 GO:0046983
Pumo3g02078 721 MobiDBLite consensus disorder prediction 154 226 - -
Pumo3g02078 721 MobiDBLite consensus disorder prediction 697 721 - -
Pumo3g02078 721 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Pumo3g02078 721 SMART finulus 465 514 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02078 Pumo-Chr3 32445023 32450058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02078 1 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.796 1.18e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo3g02078 HLH 7.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02078 K12126 - gmx:100794974 1286.55