Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02076 ATGGATGCCACATCATCGCCTAACGGTCCAAGATATTGGTATCAAGTGTCCAAACAAAGATTCTCAAAATCTCATCTGGTAGCAAGGAAAGCCACATATAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACCATTCTTTGTGGGATACCAGCTTGTGCTATAATTTCCAGTCCTTTTGATTCTAAGCCAGAGATTTGGCCAGATCCAAAGGGAGCCAAGCAAGTTATTCAAAGGTATTTGGATACCTCTGTGCTAGATGAAAGCAAAAATTTCAACCAAGAAAGCTTCACCACTCAAAGGATTGCCAAAGCCCGTGACCAACTGAAGAAGTTGCATAAGGAGAACAATGAGAAGGAGAAGACCTTGTCCTTGTTCCAATACATGCAAGGTGAAGACCTGCCAAAGACTGTTGAAAAACTTAAAGAACTTGACAAGCTGATTGAAAAGAGTGTGATGGAGATTAAAAATAAAGCGTTAAATTTGATCCAATCAAACGGTTTACAATCAGCTTTGATTGAAGGCGCATCCTCTTCTCCATTTCAAATTTCGGTCTCCACTGTGCATTCGCCCAAACCCTACCCACATCTTCTATTTGCTGTTGCTGGGCACCAAGATGAAAGTGAACATCTTGCGTATCCTTTCCATTCTTCTTCATTTCATCTTTTAACCCTTTGGTTGTTTTACTATTTTTGCATTTTACATGTTTTTGTCTTTGCTTCCCCTTGTTGTATTATTGTTTTTCCCTTCAAATTTTAG 768 0.3932 MDATSSPNGPRYWYQVSKQRFSKSHLVARKATYKKRKKGIIKKVSELTILCGIPACAIISSPFDSKPEIWPDPKGAKQVIQRYLDTSVLDESKNFNQESFTTQRIAKARDQLKKLHKENNEKEKTLSLFQYMQGEDLPKTVEKLKELDKLIEKSVMEIKNKALNLIQSNGLQSALIEGASSSPFQISVSTVHSPKPYPHLLFAVAGHQDESEHLAYPFHSSSFHLLTLWLFYYFCILHVFVFASPCCIIVFPFKF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02076 255 Coils Coil 105 125 - -
Pumo3g02076 255 SMART madsneu2 14 72 IPR002100 GO:0003677|GO:0046983
Pumo3g02076 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 62 IPR002100 GO:0003677|GO:0046983
Pumo3g02076 255 Gene3D - 27 161 IPR036879 GO:0003677|GO:0046983
Pumo3g02076 255 PANTHER MADS BOX PROTEIN 28 162 - -
Pumo3g02076 255 SUPERFAMILY SRF-like 28 96 IPR036879 GO:0003677|GO:0046983
Pumo3g02076 255 ProSiteProfiles MADS-box domain profile. 29 61 IPR002100 GO:0003677|GO:0046983
Pumo3g02076 255 FunFam Agamous-like MADS-box protein AGL80 26 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02076 Pumo-Chr3 32405218 32419694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02076 27 202 Type I MADS-box Gene Family AT1G65300 37.430 8.69e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02076 SRF-TF 3.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02076 - - gmx:100792290 196.823