Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02075 ATGACTAGGAAGAAAGTGAAACTTGCCTATATCTCTGATGTCACGGCAAGGAAATCCACATACAAGAAAAGGAAGAAGGGTATCATTAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATCCCAGCGTGTGCCATAATTTCCAGTCCTTTTGATTCTACACCAGAGGTTTGGCCAGATCCAGAGGGAGCCAAACAGGTGATTCAGAGGTATCTGGATGCATCTGTGCTAGATGAAAGCAAGAATGTCAACCAAGAGAGTTTCATCATGCAGAGGATTGCCAAAGCCCAGGAGCAATTGAAGAAACAGCGTCAGGAGAACCATGAGAAGGAGATGACCTTGTCCATGTTCCAGTACATGCAAGGTGAAGACCTGCCAAATAATGTTGAAGAACTGAAAGAACTCAACAAGATGATTGAGAAGAATTTGAAGGAAATTGAAAATAAGTTGGCTGTGCTCAATTGTGAGTCTATTAGTGTTTAG 483 0.4224 MTRKKVKLAYISDVTARKSTYKKRKKGIIKKVSELTILCGIPACAIISSPFDSTPEVWPDPEGAKQVIQRYLDASVLDESKNVNQESFIMQRIAKAQEQLKKQRQENHEKEMTLSMFQYMQGEDLPNNVEELKELNKMIEKNLKEIENKLAVLNCESISV 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02075 160 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pumo3g02075 160 Gene3D - 13 149 IPR036879 GO:0003677|GO:0046983
Pumo3g02075 160 Coils Coil 86 113 - -
Pumo3g02075 160 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pumo3g02075 160 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pumo3g02075 160 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pumo3g02075 160 FunFam Agamous-like MADS-box protein AGL92 13 108 - -
Pumo3g02075 160 PANTHER MADS BOX PROTEIN 3 150 - -
Pumo3g02075 160 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pumo3g02075 160 Coils Coil 129 156 - -
Pumo3g02075 160 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02075 Pumo-Chr3 32395096 32396727 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02075 3 159 Type I MADS-box Gene Family AT1G65300 43.827 3.17e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pumo3g02075 SRF-TF 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02075 - - gmx:100792290 278.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02075 3 32395096 32396727 Pumo3g02075 3 32395096 32396727 ECH