Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02060 ATGACATCGGTTGGTGTGGCACCAACTTCGGGTTTGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACAGTTGTTGATGGCAATGGAACGGAGACAGGACATATCATTGTGACAACCATCGGGGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCATGGATCATTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGCTGCAAACAATGCGCCTTCTTGACCACCCAAATGTTGTTGCTTTGAAGCACTGTTTCTTTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTCGAGTATGTTCCAGAAACAGTTAACCGTGTGATCAAACATTACAACAAGTTGAGCCAAAGGATGCCGCTGATATATGTGAAACTCTATACATACCAGATCTTTAGGGCATTATCTTACATTCATCGTTGTATTGGAGTCTGCCATCGAGATATCAAACCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCGTACATATGTTCTAGATATTATAGAGCACCTGAGCTCATATTTGGAGCAACTGAATATACTACAGCCATTGACATCTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATCATCAAGGTTCTGGGCACTCCGACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGATTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACGCATCCTTTCTTTGACGAGCTTCGTGATCCAAATACTCGCTTGCCAAATGGCCGATTCCTTCCACCGCTATTTAATTTCAAATCTCATGAACTGCAAGTGTTGTTTCCATATGAGAAATGCTGCGCTTTCCTTCTATTTGATGATATGATATTTGTTGGTATCTTTATTGTATTCGGTTGCCCTGTAAAAGCAGATTTAGAGATACATGCTACTCATTATCACCCAACCCCCGATGGATTGAAAGCGAAGGTGGTTGGTGTGAGAATGCCAGTGAGGAAGTATTACTGCGATTACTGCGAGAAGCAATTCCAAGACACACCAGCGGATCGGAAACGACACGTTCAGGGTATTCAGCACCAGCAAGCCAAAGCTCGCTGGTACGATTCCTTCAAAGAACACCAACAAATCCCTCCTCCTATTCCTAATCGACCCCTTTGCTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCGACTCTTGCAAATATCTCCATCCCGTTCCCAACAACAATGTACACCAGCCCCCAATCGTAACCACACCGTCACCGTCACCGTCACCAGCTAATGTGGTAGGAGTGTCATTGGGCAATCTTCCCCCCTCGCTGCAGCCTCCGCCTGACGCTGGATATCCCCACCTTCCCTTTCTAGACTGGGGATAG 1722 0.4489 MTSVGVAPTSGLREASGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLSQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELQVLFPYEKCCAFLLFDDMIFVGIFIVFGCPVKADLEIHATHYHPTPDGLKAKVVGVRMPVRKYYCDYCEKQFQDTPADRKRHVQGIQHQQAKARWYDSFKEHQQIPPPIPNRPLCFHFVNTGFCRYGDSCKYLHPVPNNNVHQPPIVTTPSPSPSPANVVGVSLGNLPPSLQPPPDAGYPHLPFLDWG 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02060 573 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02060 573 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Pumo3g02060 573 FunFam Shaggy-related protein kinase kappa 154 396 - -
Pumo3g02060 573 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Pumo3g02060 573 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Pumo3g02060 573 ProSiteProfiles Zinc finger C3H1-type profile. 494 522 IPR000571 GO:0046872
Pumo3g02060 573 SUPERFAMILY Protein kinase-like (PK-like) 73 387 IPR011009 -
Pumo3g02060 573 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 387 - -
Pumo3g02060 573 MobiDBLite consensus disorder prediction 1 29 - -
Pumo3g02060 573 Pfam U1 zinc finger 446 481 IPR013085 GO:0008270
Pumo3g02060 573 SUPERFAMILY beta-beta-alpha zinc fingers 446 490 IPR036236 -
Pumo3g02060 573 CDD STKc_GSK3 69 361 IPR039192 -
Pumo3g02060 573 SMART c3hfinal6 495 521 IPR000571 GO:0046872
Pumo3g02060 573 Gene3D - 488 539 - -
Pumo3g02060 573 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02060 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Pumo3g02060 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 496 520 IPR000571 GO:0046872
Pumo3g02060 573 Gene3D Transferase(Phosphotransferase) domain 1 154 394 - -
Pumo3g02060 573 MobiDBLite consensus disorder prediction 528 560 - -
Pumo3g02060 573 SUPERFAMILY CCCH zinc finger 494 523 IPR036855 GO:0046872
Pumo3g02060 573 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo3g02060 573 Gene3D Classic Zinc Finger 445 487 - -
Pumo3g02060 573 SMART ZnF_U1_5 445 480 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02060 Pumo-Chr3 32104421 32110767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02060 80 386 MAP Kinase Gene Family AT2G43790 35.110 3.25e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pumo3g02060 Pkinase 9.2e-65 CL0016
TF C3H Pumo3g02060 Pkinase 9.2e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02060 K00924 - gmx:100780226 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02060 3 32104421 32110767 Pumo3g02060 3 32104421 32110767 ECH