Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02051 ATGGCGCGCACTCCTAAGTCCAAAGGCGGTTCCTCCGCCGCCGCCGCCTTCTTCAAGCCCGGCACTGCCGTCGAAGTCAATTCCGAGGACGAAGGCTTCCGCGGATCCTGGTTCACCGGCACCGTCATCCGCCGCCTCGCCTCCGAAAGGTTCCTAGTCGAATACGACAACCTCATGGCCGACGAAAAAAACTCGAAGAAGTTGAGAGAAGTCCTTGGTCTCCGCCACCTTCGGCCCCTTCCGCCGATGGAGACCGACCGCAAATTCAAATTCGGCGACGAGGTCGATGCGTACCACAATGATGGTTGGTGGGAGGGTTACATAACACAAGAATTGGAGAATGACAAATTCGCGGTGTATTTCAGAGTATCAAAGGAGCAATTGGTCTTTTCCAAAGAGCAACTCAGGCTCCACCGTGAGTGGTTCAATTACGATTGGGTCCCACCACTCGAACAACCACCACAACAGGGTAATGGTGAATCGAAGAAAGTGTTGTTGACACCGAATGTGAAGTCTGTTGAAACTGTGAAGGGGAAGGAGTTTGGCGTAGGGGCCATAGTTGAGGTTAGCAGTGACGAAGATGGGTTCAGTGGAGCTTGGTTTGCTGCCACTGTTGTTGAGGCAGTGGGGAAGGACAAGTTCCTTGTTGAGTACCAGAATCTGTTGGCTGATGATGATTCTCAGCTTTTGAGAGAGGAGATTGATGTTCTGCACATAAGGCCTCATCCACCGGACACTGATGTTGATGGTCAATTCAGTCTTCTTGATGAAGTTGATGCTTTCTACAATGATGGTTGGTGGATCGGTGTGATTTCTAAGGTTGTCGCTGATTCAAGGTATGTAGTTTACTTTAGGTCTTCTAATGAAGAACTAGAGTTTGAGCACTCCCAGTTGAGGCTGCACCAGGACTGGATGGGTGGCAAATGGGCCATGCCTTGTAAGGCATTGAAGTTGTGA 957 0.5047 MARTPKSKGGSSAAAAFFKPGTAVEVNSEDEGFRGSWFTGTVIRRLASERFLVEYDNLMADEKNSKKLREVLGLRHLRPLPPMETDRKFKFGDEVDAYHNDGWWEGYITQELENDKFAVYFRVSKEQLVFSKEQLRLHREWFNYDWVPPLEQPPQQGNGESKKVLLTPNVKSVETVKGKEFGVGAIVEVSSDEDGFSGAWFAATVVEAVGKDKFLVEYQNLLADDDSQLLREEIDVLHIRPHPPDTDVDGQFSLLDEVDAFYNDGWWIGVISKVVADSRYVVYFRSSNEELEFEHSQLRLHQDWMGGKWAMPCKALKL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02051 318 CDD Tudor_Agenet_AtDUF_rpt2_4 254 300 - -
Pumo3g02051 318 CDD Tudor_Agenet_AtDUF_rpt2_4 92 137 - -
Pumo3g02051 318 CDD Tudor_Agenet_AtDUF_rpt1_3 18 82 - -
Pumo3g02051 318 Gene3D - 170 252 - -
Pumo3g02051 318 CDD Tudor_Agenet_AtDUF_rpt1_3 181 244 - -
Pumo3g02051 318 SMART agenet_At_2 87 143 IPR014002 -
Pumo3g02051 318 SMART agenet_At_2 179 247 IPR014002 -
Pumo3g02051 318 SMART agenet_At_2 250 306 IPR014002 -
Pumo3g02051 318 SMART agenet_At_2 16 85 IPR014002 -
Pumo3g02051 318 Pfam Agenet domain 184 244 IPR008395 -
Pumo3g02051 318 Pfam Agenet domain 21 82 IPR008395 -
Pumo3g02051 318 Pfam Agenet domain 92 150 IPR008395 -
Pumo3g02051 318 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 177 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02051 Pumo-Chr3 32006345 32010747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02051 191 304 PHD Transcription Factor Family AT5G58610 31.618 5.83e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02051 - - gmx:100805605 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02051 3 32006345 32010747 Pumo3g02051 3 32006345 32010747 ECH