Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02045 ATGGCGTCTTTCGAGCCGAACTTAGATTCAAGTAATTCCGACACGTTGCGAGAATCCAATCACAAGAAACGCAGGAAAATCGGAGACCACGCCGCCGATCACAATTCCGCCGCCGCCGTCGTCCCGTGGAGATCCGACGCCGAGCAGCGGATCTACTCCCGCCGCCTCGTCGAGGCTCTCCGCCGGACTCCTTCATCGGCGGCCAAGCCTAGAGCCGCCGGCCAGGTCCGCGAGACCGCCGACCGAGTCCTCGCCGCCACCGCCAGGGGCCGAACGCGGTGGAGCCGCGCGATTCTCAACCGGTGGAAGAAGCTCCGCACGCAGCACAAGAAGGCGAAGAAGGCGGCGTCATCCAACGGTTTGAAGAGAACGAGGATTGGTAACGGCGAGAGGAGGAACCGGTTACCGGCTGTGCAGAAGAAAGCGCGCGTTCTCAGCCGGTTGGTACCCGGTTGCCGGAAGGTCTCGTTCCCGAACCTTCTGGAAGAAGCCACGGACTACATCGCCGCCATGAAGATGCAAGTGCGAGCCATGACGGCTCTCGCCGAACTACTCTCCGGCGCCGCGCCGGCCGGACTCGCCGGCGGCGCGTTGAGTTGA 600 0.6367 MASFEPNLDSSNSDTLRESNHKKRRKIGDHAADHNSAAAVVPWRSDAEQRIYSRRLVEALRRTPSSAAKPRAAGQVRETADRVLAATARGRTRWSRAILNRWKKLRTQHKKAKKAASSNGLKRTRIGNGERRNRLPAVQKKARVLSRLVPGCRKVSFPNLLEEATDYIAAMKMQVRAMTALAELLSGAAPAGLAGGALS 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02045 199 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 44 185 IPR044660 GO:0006355
Pumo3g02045 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
Pumo3g02045 199 MobiDBLite consensus disorder prediction 1 38 - -
Pumo3g02045 199 MobiDBLite consensus disorder prediction 107 126 - -
Pumo3g02045 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 171 IPR011598 GO:0046983
Pumo3g02045 199 MobiDBLite consensus disorder prediction 15 32 - -
Pumo3g02045 199 CDD bHLH_AtIBH1_like 130 182 IPR044549 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02045 Pumo-Chr3 31940399 31941436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02045 1 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09250 45.876 1.48e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02045 - - gmx:100783462 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02045 3 31940399 31941436 Pumo3g02045 3 31940399 31941436 ECH