LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02039	ATGGATTTCCAGGGATTCCTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGATAAAGCACGAACAATGAACTCAGAAAAGGAAAATGCTTCATCTTCTCGACTTACTGGATCCGTGGGTGTGGAGAAGGCATCAAAAGGAGATACTATTTCTTTTGATCGTGCAAGAAATTCTCCAGGACAGTATGATTTATCAAGAATTAATGATCCTTTCAATCGTTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCTGAGAAAGATCTGGGTAATGAGTTTTTCAAACAAAAAAAGTTTAAGGAAGCTAGAGAATGCTATTCAAGGAGCATTGCTTTATCACCAACAGCTGTAGCACATGCCAATAGGGCAATGGCCAATATCAAGCTCAGAAGATTCCAAGAGGCTGAGGATGACTGCACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGAAAATTTAAAGAATCAATGGAGGATGCTGAATTTGCCTTGAGGCTGGAACCAAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTCTGAGAAGAACTGTACAGGGAACTCAAAAAGTGGGAAAGTCAGAGGAAAAAGTTAATGGAGGCAGCATCCACCCCATTTCGCATGGTACTCAAGAGTCTGGGCCAGCTGAAGTTCATCATCATAAGAAGGGTAATGAGCGGCAAATACCTGTTAAAGAATCACTCTTAACAGAGGAGGTTGATAGCAGAGATACAAAAGCCAGAAGCAGGCCTCAAGCAGAGGTAGGCAATGGTTCTAAGGAAGGTTTGAGTGCAAGCAACAGTTTGGAGCAGAGAAATCACAGAATTGCTAAGCAGGAAATGAAAGTATCTGTTCAACAGCTAGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCCAAAAACATAACACCACCAACTACAGCTTATCAGTTTGAGGTCTCTTGGAGAGCATTTTCAGGTGATCTTGCTCTGCAGGCTCATCTATTAAAGGCTATATCTCCCCATGAATTACCTAAAATATTCAAAAATGCCTTATCTTCTACCCTACTAATTGACATCATCAAGTGTCTTGCATCTTTTTTCACCGAGGACACGGATCTGGTTGTCAGTTATATGGAGCATTTGACCAAGGTACCAAGATTTGACGTGATTGTACTGTGCCTTTCATCAACAAATAAGGATGACATACGCAAGATCTGGGATGAAGTGTTCAGTAGTGAGGCAACACCAATTGAGTATGTAGAGATTCTGGACAACCTCCGATCAAAGTTCTGCCTTGGAAAGTGA	1389	0.4125	MDFQGFLNDLQDWELSRKDKARTMNSEKENASSSRLTGSVGVEKASKGDTISFDRARNSPGQYDLSRINDPFNRLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARECYSRSIALSPTAVAHANRAMANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKFKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRRTVQGTQKVGKSEEKVNGGSIHPISHGTQESGPAEVHHHKKGNERQIPVKESLLTEEVDSRDTKARSRPQAEVGNGSKEGLSASNSLEQRNHRIAKQEMKVSVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDLALQAHLLKAISPHELPKIFKNALSSTLLIDIIKCLASFFTEDTDLVVSYMEHLTKVPRFDVIVLCLSSTNKDDIRKIWDEVFSSEATPIEYVEILDNLRSKFCLGK	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02039	462	SUPERFAMILY	TPR-like	83	199	IPR011990	GO:0005515
	Pumo3g02039	462	ProSiteProfiles	TPR repeat profile.	154	187	IPR019734	GO:0005515
	Pumo3g02039	462	MobiDBLite	consensus disorder prediction	18	67	-	-
	Pumo3g02039	462	Pfam	Potential Monad-binding region of RPAP3	338	427	IPR025986	-
	Pumo3g02039	462	ProSiteProfiles	TPR repeat profile.	87	120	IPR019734	GO:0005515
	Pumo3g02039	462	SMART	tpr_5	154	187	IPR019734	GO:0005515
	Pumo3g02039	462	SMART	tpr_5	121	153	IPR019734	GO:0005515
	Pumo3g02039	462	SMART	tpr_5	87	120	IPR019734	GO:0005515
	Pumo3g02039	462	MobiDBLite	consensus disorder prediction	216	299	-	-
	Pumo3g02039	462	PANTHER	OS05G0129900 PROTEIN	1	460	-	-
	Pumo3g02039	462	MobiDBLite	consensus disorder prediction	246	282	-	-
	Pumo3g02039	462	Gene3D	Tetratricopeptide repeat domain	79	185	IPR011990	GO:0005515
	Pumo3g02039	462	MobiDBLite	consensus disorder prediction	52	66	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02039	49	191	Calmodulin-binding Proteins	AT3G25230	27.044	1.00e-08	55.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo3g02039	3	31808963	31815000	Pumo3g02039	3	31808963	31815000	ECH