Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02036 ATGGAAGATATTTACAAGATGAACCCTCTTCTGTCTTGTACGGAGGATGTTGTTAGGGGAGTCAACGTCAACGTTTCGGCTACTGGTGCTTCTGAATTGAATCTAGGACTGGTGGCTAATAACTTCCTTCAGCTGGAAGAGCCCGAAAGTTCGGATCGGTTCATCAAGTCCCAGATCGCCACTCACCCTCTCTATCCAAATCTAGTATCTGCTTACATAGAATGCCGAAAGGTTGGAGCACCACCAGAACTGGCTTCACTTCTTGAAGAAATAGCCCGTGAAAGCCACCCAACGGATGCACTTCGTGAAATAGGAGATGATCCTGAGCTTGACGAGTTCATGGAGTCATATTGCGAAGTTCTTCATAGATACAAGCAGGAGTTGTCCAAGCCATTCAACGAAGCGACCTTGTTTTTGTGTAATATCGAATCACAACTCAGCAATCTTTGTAAGGGAACACTAACAACGCCATTGGATAACAACCGCTCAGATGAGGCCGCTGGGACATCAGAGGATGAATTAAGTTGGGAGAAGGTGGAAGCAGTTGAAGGTCACGAATCTTCTGGCCCACGTCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGAAAAAAGGGTAAGCTACCAAAAGATGCAAGGATGATACTCATGGACTGGTGGAGCACTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAACGACGGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAACGGCATTGGAAACCATCAGAGGACATGCGATTCGCCATTATGGATGGTGTAAGTGGCAGTGGCATAGGAGGAGGACCTATGTAA 906 0.4536 MEDIYKMNPLLSCTEDVVRGVNVNVSATGASELNLGLVANNFLQLEEPESSDRFIKSQIATHPLYPNLVSAYIECRKVGAPPELASLLEEIARESHPTDALREIGDDPELDEFMESYCEVLHRYKQELSKPFNEATLFLCNIESQLSNLCKGTLTTPLDNNRSDEAAGTSEDELSWEKVEAVEGHESSGPRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARMILMDWWSTHYRWPYPTEEEKVQLSETTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVSGSGIGGGPM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02036 301 Pfam KNOX2 domain 104 150 IPR005541 GO:0003677|GO:0005634
Pumo3g02036 301 SMART ELK_2 196 217 IPR005539 GO:0003677
Pumo3g02036 301 Pfam Homeobox KN domain 236 275 IPR008422 GO:0003677|GO:0006355
Pumo3g02036 301 ProSiteProfiles 'Homeobox' domain profile. 216 279 IPR001356 GO:0003677
Pumo3g02036 301 MobiDBLite consensus disorder prediction 154 175 - -
Pumo3g02036 301 ProSitePatterns 'Homeobox' domain signature. 254 277 IPR017970 GO:0000981|GO:0006355
Pumo3g02036 301 Pfam KNOX1 domain 55 96 IPR005540 GO:0003677|GO:0005634
Pumo3g02036 301 SUPERFAMILY Homeodomain-like 218 291 IPR009057 -
Pumo3g02036 301 CDD homeodomain 228 280 IPR001356 GO:0003677
Pumo3g02036 301 Pfam ELK domain 196 217 IPR005539 GO:0003677
Pumo3g02036 301 SMART HOX_1 218 283 IPR001356 GO:0003677
Pumo3g02036 301 ProSiteProfiles ELK domain profile. 196 216 IPR005539 GO:0003677
Pumo3g02036 301 SMART KNOX1_2 53 97 IPR005540 GO:0003677|GO:0005634
Pumo3g02036 301 SMART KNOX2_2 100 151 IPR005541 GO:0003677|GO:0005634
Pumo3g02036 301 Gene3D - 214 286 - -
Pumo3g02036 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 64 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02036 Pumo-Chr3 31772689 31777749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02036 55 294 Homeobox Transcription Factor Family AT1G23380 55.020 3.76e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pumo3g02036 KNOX2 7.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02036 - - gmx:102660463 518.85