Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02021 ATGGGAAGTAGTAGCAGGAAGAACAAGCAAGATCTGGAGTTAGAGAAAGTTCGCTTAATCAGTTTAGCCCTCGAGTTCGGCTTCGACGAATCCTCCTCTAACAAATGCCTCGACCGTCTCATCGATCTCTACGGCGAAGACGGTCGCGATTTCATCACCGTCGAGCACTGCGGCGACGATTTTCTCGCGGCGTTGGCGGAGTCGATGCAGAATGAGGATTGGGATGACCAGCAGGAAATGGAATCGCAAGCGTGCGGAACCTTGGCGCACGTGCTCGACAAAACCGTTGCCACGTGTGCCGATGCAGATAACTACGATGCTTCGAGAAGCTTCGTTGATATTGTTGACGACTCGCCTCAACCGCAGAGACGCAAACGCCACACTAATGTAGTGGAGTTGGATTCCAGTGACGACGAGGATATGCATTGTAGTGTTTCGAGGGGAAAATCAATGGATTACAGAAGTGGCATCACTCAAGGCTCGGTTTCATCAACTTCCAGCAAAATGCAATCCTCCTTTGCATCAAGGGATAAAAGCAGTACTCTCACTTATGAAGAATTGCAAGCACTAGATGATATTGAACTGGCCAATGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGGCAAAGCAAGATTCTTTTATTCTTATGCCTACTGGGGGCGGTAAATCTCTTTGCTATCAGCTTCCAGCAACTCTTCAACCAGGTGTTACAGTAGTTGTATCTCCATTACTTTCACTCATTCAGGATCAGATAATAACACTAAACCTCAAGTTTGGAATACCTGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTGCTCCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTGTATGTGACACCTGAGAGAATTGCTGGCAACCAATCATTTCTTGAGATTCTAAAATGCATGCATCGGAAGGGACAGCTAGCAGGTTTTGTTGTTGATGAGGCACACTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCTAGATGTACCTGTCATGGCATTGACTGCCACTGCAACCCACGCAGTTCGTGAGGACATATTGAATGCTTTAAGAATTCCCCATGCACTTGTTCTTGAAAGAAGCTTTGACAGACCAAATTTGAAATATGAAGTGATTGGTAAGACAAAGGAGCCACTAAAGCAGCTTGGACAGTTATTAATTGATCGCTTCAGGAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGATGTCTCCAAATTTTTGAATGAGAAATGCAAGATCAAGACAGTGTATTACCATGCTGGCTTGGCTGCCCGCCAGAGAGTAGCCGTTCAAAAGAAATGGCATGATGGGGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGAATGGGGATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTCCTTCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTATGCATGATAAGAAATGGCCAAGGATATAAAAAGGAAAGTTTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTTGGAGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGA 1824 0.4331 MGSSSRKNKQDLELEKVRLISLALEFGFDESSSNKCLDRLIDLYGEDGRDFITVEHCGDDFLAALAESMQNEDWDDQQEMESQACGTLAHVLDKTVATCADADNYDASRSFVDIVDDSPQPQRRKRHTNVVELDSSDDEDMHCSVSRGKSMDYRSGITQGSVSSTSSKMQSSFASRDKSSTLTYEELQALDDIELANVVIFGNRTFRPLQHQACKVALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHRKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFLDVPVMALTATATHAVREDILNALRIPHALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFRNQCGIVYCLSKSECVDVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTAMAQAKKMQEYCEIKVECRRQTLLKHFGESFDRKACKYGSSPCDNCLKTVL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02021 607 Gene3D - 162 397 IPR027417 -
Pumo3g02021 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 570 IPR001650 -
Pumo3g02021 607 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 329 338 IPR002464 -
Pumo3g02021 607 Pfam RecQ zinc-binding 534 603 IPR032284 -
Pumo3g02021 607 CDD DEXHc_RecQ 200 397 - -
Pumo3g02021 607 SMART ultradead3 202 406 IPR014001 -
Pumo3g02021 607 Pfam DEAD/DEAH box helicase 208 376 IPR011545 GO:0003676|GO:0005524
Pumo3g02021 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 390 IPR014001 -
Pumo3g02021 607 CDD SF2_C_RecQ 398 531 - -
Pumo3g02021 607 PANTHER DNA HELICASE RECQ FAMILY MEMBER 188 603 - -
Pumo3g02021 607 Pfam Helicase conserved C-terminal domain 414 521 IPR001650 -
Pumo3g02021 607 Gene3D - 398 606 IPR027417 -
Pumo3g02021 607 NCBIfam RecQ family ATP-dependent DNA helicase 200 605 IPR004589 GO:0004386|GO:0006310
Pumo3g02021 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 543 IPR027417 -
Pumo3g02021 607 FunFam ATP-dependent DNA helicase 398 605 - -
Pumo3g02021 607 FunFam ATP-dependent DNA helicase 187 397 - -
Pumo3g02021 607 SMART helicmild6 440 522 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02021 Pumo-Chr3 31429612 31435588 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02021 331 520 Eukaryotic Initiation Factors Gene Family AT5G11170 26.943 8.90e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02021 K10899 - gmx:100806070 1125.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02021 3 31429612 31435588 Pumo3g02021 3 31429612 31435588 ECH