LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02018	ATGGTATCAAGTAGTAGGCAATCTTTTGAGGGGCATGAGGGTGATGACGGCAGAGGTCATAGAATTCCAGTTATGCAGTCTAAACAGAAACATGGTGATCCAAAACAAGCATCTCTTAGTGGCCTCAGAAATGTGATAAAAGGGCTGTGGACTAATGACTGCGAGTTGCACTTTGAACGTTTCCTCCGTAGAGTGGTACGAGAGGAGGTGGAACCTAAAATCCAGGATTTCCTATCTTCAAGGCCATGGGTTAATGAGACTAGCACATCTAGAGCAACACCCTTCGAGTTGCGTTTCATTAATAAATTGCCTGATATAATCTTTACCCACTCTAACATGATAGCAGAGGATAAAACACCCATTCAAATTGCTCTCTTTGATGTTAGAGATCAATCAGTGGTTAATGTTGGTCCCCTCTCCTCTCTTAAGGTAGAGATCTGTGCCCTCAATGGCGAGTTCGGTTTGAATGGAAGTGAGGATTGGACTGAAGCTGAATTCAATGCCAATATCCTGCGTGAGAGAGATGGTAGAAGGCCATTATTGAATGGAGACAGGTTTATTACTCTGAAAAATGGAGTAGGTTGTGTCAATAAAGTTATGTTCACAGATAATTCGAGATGGATAAGAAGCAGAAAGTTTAGGTTGGGAGCCAAAGTTGCGCAACCAACTTCTATTGAAGCAAACATTAAGGAAGGTAGAAGCGCACCTTTTGTGGTCAAAGATTACAGAGGAGAGTCGTACAAGAAACACCACCCTCCTTCTTTGAATGATGATATTTGGCGTTTAGAGCAAATTGCCAAAGATGGAAAAATCCACGAGCGGCTATCTCCCCATGGAATTCACACTGTTAAGGATCTCTTGAGGTTATACACAACAAACCCATCTTCATTACTTGAGAAGGTTGGCAACATTTCGAAGAGGTCATGGATAACAATTATGGAACATGCCATGACTTGTGTGATAGATGATAACGAGACTTTCGTCTACCACACAGAACAATCGACAGGCCTGCTTTTCAATTCCATCTACGACCTTGTAGGTGTGACATTCGATGGGCAAAATTATCGCTCTCTTGATACTCTCAACCCCAATGAGAAGCATTTGGTGGAAATATTGAAGCAGCATGCTTACAAAAATACGGATAATTTCAAATCAATTCATGAGACATCATTGAGCTGCTCAAGACCATTGGCATGTCTAGGAGCAGTGCAGTCTGATGCTACAGAGCAAGGTCTGCAACAGTTCAATATCTCTAGAGAACAAGAAGGTCATCAAGGAACATGGGCTGGTAATGGTCAACCACATGCCTCAACTTCAAATATAGATGAAGGCGTACATAGTTACCAAATCTATGCTGATCCAGTGCCAGACTTAACAGACATGCCACTGAACAATCCTTATGGCAACAATTCAATGAAGGATTTTTTGTCTGGATTGTGCATTGAAGGGGATAGTTGGGTCCCTTATGGATAA	1473	0.4196	MVSSSRQSFEGHEGDDGRGHRIPVMQSKQKHGDPKQASLSGLRNVIKGLWTNDCELHFERFLRRVVREEVEPKIQDFLSSRPWVNETSTSRATPFELRFINKLPDIIFTHSNMIAEDKTPIQIALFDVRDQSVVNVGPLSSLKVEICALNGEFGLNGSEDWTEAEFNANILRERDGRRPLLNGDRFITLKNGVGCVNKVMFTDNSRWIRSRKFRLGAKVAQPTSIEANIKEGRSAPFVVKDYRGESYKKHHPPSLNDDIWRLEQIAKDGKIHERLSPHGIHTVKDLLRLYTTNPSSLLEKVGNISKRSWITIMEHAMTCVIDDNETFVYHTEQSTGLLFNSIYDLVGVTFDGQNYRSLDTLNPNEKHLVEILKQHAYKNTDNFKSIHETSLSCSRPLACLGAVQSDATEQGLQQFNISREQEGHQGTWAGNGQPHASTSNIDEGVHSYQIYADPVPDLTDMPLNNPYGNNSMKDFLSGLCIEGDSWVPYG	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02018	490	PANTHER	OS02G0177800 PROTEIN	26	436	IPR012416	GO:0005516
	Pumo3g02018	490	MobiDBLite	consensus disorder prediction	1	37	-	-
	Pumo3g02018	490	Pfam	Calmodulin binding protein-like N-terminal domain	96	241	IPR046831	-
	Pumo3g02018	490	MobiDBLite	consensus disorder prediction	9	28	-	-
	Pumo3g02018	490	Pfam	Calmodulin binding protein central domain	254	319	IPR046830	-
	Pumo3g02018	490	Pfam	Calmodulin binding protein C-terminal domain	326	385	IPR046829	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02018	Pumo-Chr3	31404399	31407725	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02018	42	399	Calmodulin-binding Proteins	AT5G26920	42.391	2.88e-88	275

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02018	-		-	gmx:100806598	854.358