Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02017 ATGTCGTATCGCCCAAGCGGGAACTCCAGGACCGAGGTCCGCCGGAACCGGTACAAGGTGGCGGTGGACGCGGAGGAAGGTCGGAGACGACGAGAAGACACGATGGTGGAGATCCGCAAGAACCGCAGAGAAGAGAGTTTGCAGAAGAAGAGGCGCGAGGGTCTCCAACCTCAGCAGATGCCAGCCTCCGTTCACTCTACTTTGGTAGAGAAGAAGTTGGAACACCTACCATCCATGGTTGCTGGTGTGTGGACTGATGATAATAGCCTGCAGCTCGAGGCGACGACTCAGTTTAGGAAGCTGCTTTCGATTGGTTCGGGATTGTCTCTGTGTTTAATTTGTTGTTTTGTGAGTTTTAATGGAATTTGGTTAATTTGTTTTTTGTGTGTGCCAGAACGTAGTCCACCGATTGAGGAGGTTATACAGACTGGTGTGGTTTCTCGCTTTGTTGAGTTTCTGATGAGGGAAGACTTTCCACAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACCAAGGTGGTGATTGACCATGGGGCTGTCCCAATTTTCGTGAAGCTACTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCTTTAGGAAATGTTGCTGGGGATTCTCCCAGATGTCGTGATCTCGTTCTCAGTCATGGAGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCTCTTCCTGCTCTTGCCCGTCTTATCCATTCAAACGATGAAGAAGTATTGACTGATGCATGTTGGGCACTTTCATATCTTTCCGATGGTACGAATGATAAAATCCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGTTGCTACTGCACCCATCCCCTTCAGTGCTAATTCCTGCTCTTCGAACTGTTGGAAATATCGTCACTGGAGATGATATGCAAACTCAGGTTATCATCAATCATCAGGCTCTTCCTTGCCTTCTGAATCTGTTGACCAATAATTATAAAAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATATAATTGCTCCTTTGGTCAACCTGCTTCAAAATGCCGAGTTTGATATCAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACATCTGGTGGTTCTCATGAGCAAATCAAGTTCCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTTTGGAAGGCCTTGAAAACATCTTGAAGGTGGGAGAAGCTGATAAAAATATCAGCAATACTGGTGATGTGAATCTATATGCCCAAATGATTGACGACGCTGAGGGCCTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACACAGAGATTTACGAAAAAGCGGTCAAGATTCTTGAGACATACTGGCTGGAGGAGGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAGTCAGGGTTCAACTTTGGTAGCAGTGAGGCTCCTGCTGTGCCTTCCGGTGGATTCAACTTTAATTAG 1680 0.4613 MSYRPSGNSRTEVRRNRYKVAVDAEEGRRRREDTMVEIRKNRREESLQKKRREGLQPQQMPASVHSTLVEKKLEHLPSMVAGVWTDDNSLQLEATTQFRKLLSIGSGLSLCLICCFVSFNGIWLICFLCVPERSPPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNISNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDASQSGFNFGSSEAPAVPSGGFNFN 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02017 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 144 187 IPR000225 GO:0005515
Pumo3g02017 559 MobiDBLite consensus disorder prediction 22 61 - -
Pumo3g02017 559 PANTHER IMPORTIN ALPHA 14 529 - -
Pumo3g02017 559 SMART arm_5 133 174 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 344 385 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 387 427 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 430 470 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 261 300 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 217 259 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 176 216 IPR000225 GO:0005515
Pumo3g02017 559 SMART arm_5 302 342 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 134 174 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 387 426 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 345 385 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 176 215 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 272 299 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 218 259 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 303 341 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Armadillo/beta-catenin-like repeat 431 468 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Atypical Arm repeat 485 531 IPR032413 -
Pumo3g02017 559 Gene3D - 74 524 IPR011989 -
Pumo3g02017 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 313 IPR000225 GO:0005515
Pumo3g02017 559 Pfam Importin beta binding domain 14 96 IPR002652 GO:0006606|GO:0061608
Pumo3g02017 559 Gene3D - 12 52 IPR036975 GO:0006606
Pumo3g02017 559 FunFam Importin subunit alpha 124 524 - -
Pumo3g02017 559 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 187 229 IPR000225 GO:0005515
Pumo3g02017 559 MobiDBLite consensus disorder prediction 529 559 - -
Pumo3g02017 559 FunFam Importin subunit alpha 13 52 - -
Pumo3g02017 559 PIRSF Importin_alpha 5 558 IPR024931 GO:0005737|GO:0006606|GO:0061608
Pumo3g02017 559 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Pumo3g02017 559 SUPERFAMILY ARM repeat 14 528 IPR016024 -
Pumo3g02017 559 MobiDBLite consensus disorder prediction 22 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02017 Pumo-Chr3 31384416 31389777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02017 165 418 U-box Gene Family AT1G71020 20.784 5.40e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02017 K15042 - gmx:100789135 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02017 3 31384416 31389777 Pumo3g02017 3 31384416 31389777 ECH
Pumo5g03609 5 85556865 85562288 Pumo3g02017 3 31384416 31389777 ECH
Pumo3g02017 3 31384416 31389777 Pumo5g03609 5 85556865 85562288 ECH
Pumo5g03609 5 85556865 85562288 Pumo3g02017 3 31384416 31389777 PCT