Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02013 ATGGTTAGGGGAGGAAGGTTTAGTGGCAAACGCAATTTCAGAAAAAGGGTTTGGTCAAAGGAGGGAGGTTCTGATGATTCCGATGAGGACTATGTGGTTTCAGACGAAGGTAGAGAGGCATCTGACTATTATTGCTCCTCCTTAGATGGATGTGCATCGGAGGAGAGTTTTGATAGTTTTATGGAAGAAGAGGACGAGGAGGAATTTCAAAGACCGAGGAGTTTCAATAGATCCAAGTCAAAAAAGGGCATTACTGGTTGGCGGAAAAATGGCATTAAAAACTTACACAAGAGGGGAAGGATTACATATGCAGAAGAAGAGGAGGAAGAGGAAGAGGTAGAGGAAGAGGAAGAATACAAAGAGGAAGAGGAAGAGGAGGAATACAAAGAGGAAGAGGAAGAGGAAGAATACAAAGAGGAAGAGGAAGAGGAAGAATACAATGAGGAAGAGGAAGAGGAAGAATACAAAGAGGAGGAGGAAATTCAAGAAACGAGGAATTTCAATAGGTCAAAGGCCAAAAATGGTGTATGTGGTAAGAAAAAACGTGCAGGTAAAATCTCCCCAAAGAGGGGAAGGAAAATACGTGCAGAACAACTGGAAGAAGAGGAGGAGGAGGAAGAGAAGAAACAGGTGGAGGAGGAGGAGGAAGAAGAGGTGAAGCAGGTGGAGGAGGTGGAGAGAATTGGAGATGAGGAAGAAAAACAGGAGGGAGATAGAGATGGAGAAGATGAAGATTTTGAGTATGATGATGAGGATGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATAAGGGGGAGAAGGAACAAAATTGATGGCATGAAAATGGACAAGAAGGTTTTGCAGAAGAAAAGGGCCTCTGTGGTTTCTACCAGGGGTCGGAAAAGGCGGAGTTCTAGAGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAGATGTGAAGATGAAGATGATTTTATAGATGATAATGGCCCAACCATCAGGACAATGACTAGGAGAAAGTGTGGCCAGAAGAGAAGGGTGGTTCTTTCAGAATCAGATTATGCATTTTCTGGATCATCTGATTTTGAGTTTACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAATAATGAAGAGGTTGGTGTCCACGAGGATCAACATCCACAGCGGAAGCCTCCAGGTCGGAAGGGTAAGGAAAAGATAGAAGAACCTCAGGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGGTGGGAAAGCAAACGTGTGGAATTTGTCTATCTGAAGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTCTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAACAGAGATTCAAAACAATCAGCAAGCCTGCACGGTCAACGACAGGGATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGTGACCAGGTTTATCAGCCCTCTGAAGAAGAACTAAGGAGCTATATTGATCCATATGAATATGTTATTTGTTCAGAGTGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGCAATTGGTATTGTGATGGATGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGGTGTGGCTGATCCAAGGGTATCGGTCCAGAGCCTTCCTGTTAGACCACCCCCTGTTCTACACGTACGAGAAAGTATAGATCTCAACTTGATTTCATCACCCCGTGCAGCTTTTAATCAAGGTTTTGGGCATCTCTCGTCTTCTAGATTTAGTGGCAGAAGTGTTGAAGGAGTTTCTCCCGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAGATTCAACAACTACTTTCAAATGATAGGATGGCTTCTACACCTGGCAGAACCAATGGTATTTCAGCTACCAGTTCAACTAGTAACTTATATAGCTCTCAAATTGATCAAAGTAGGGGAACCGCCACTCTACATGCAAGGACACAGGATGTGGGAACATCATACCACACATTTTTTGACGAGAGATTATGCAACAATTCTGCTCCATTAATGCAGAATGGGGCATTATGGCCTGGACTTATGGGGACACCCCCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCAGATCAAACATTGTTCCTGATGATGGCTTATCCCCTGTTGTCAGAGAAGAGAGTAACTTTCACATTGCAAAGGAGCAGTTGCAGTCAATGGTTAAAAGCCACTTGAAGAGCTTGTCTCAAAATATTGATTTAGGTAAGTATTGCTTTTCTTCTATTCTATCAGTTGCAGTTTTTCTGTTTCTACCACTTTTTTCTCGTTCATCATATGGGGAGGGAGGGATTTTTGCTACATTTTGGACTCAAACACATAAAGTGGGGCCTTCCCCCACCTTTAGAGACACGGTACATGACTATGAAACCACAAGGCCCGGATCATTACAAAAATTGAGGACAGGCTTTCCTGTCTGTGAAGAGAACCTTCATAGAGGTACCTGTGCGTTAATCCTTTTTTAA 2718 0.4294 MVRGGRFSGKRNFRKRVWSKEGGSDDSDEDYVVSDEGREASDYYCSSLDGCASEESFDSFMEEEDEEEFQRPRSFNRSKSKKGITGWRKNGIKNLHKRGRITYAEEEEEEEEVEEEEEYKEEEEEEEYKEEEEEEEYKEEEEEEEYNEEEEEEEYKEEEEIQETRNFNRSKAKNGVCGKKKRAGKISPKRGRKIRAEQLEEEEEEEEKKQVEEEEEEEVKQVEEVERIGDEEEKQEGDRDGEDEDFEYDDEDDEFLPEEEDYSDEEEEIRGRRNKIDGMKMDKKVLQKKRASVVSTRGRKRRSSRASKKPLRNKRRKNGRLRKKERCEDEDDFIDDNGPTIRTMTRRKCGQKRRVVLSESDYAFSGSSDFEFTISEEEREQVREAKKLCGNLRNNLRSSSHLINNEEVGVHEDQHPQRKPPGRKGKEKIEEPQGRKGKEKVEDLKSEVGKQTCGICLSEEDKRRVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGVADPRVSVQSLPVRPPPVLHVRESIDLNLISSPRAAFNQGFGHLSSSRFSGRSVEGVSPVSGGAPTLSERRWIHRQIQQLLSNDRMASTPGRTNGISATSSTSNLYSSQIDQSRGTATLHARTQDVGTSYHTFFDERLCNNSAPLMQNGALWPGLMGTPPVPDCEQVHQFSRSNIVPDDGLSPVVREESNFHIAKEQLQSMVKSHLKSLSQNIDLGKYCFSSILSVAVFLFLPLFSRSSYGEGGIFATFWTQTHKVGPSPTFRDTVHDYETTRPGSLQKLRTGFPVCEENLHRGTCALILF 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02013 905 PANTHER F18C1.6 PROTEIN 185 828 - -
Pumo3g02013 905 Coils Coil 375 395 - -
Pumo3g02013 905 ProSiteProfiles Zinc finger RING-type profile. 453 495 IPR001841 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 235 265 - -
Pumo3g02013 905 Pfam Ring finger domain 452 495 IPR001841 -
Pumo3g02013 905 SMART PHD_3 545 590 IPR001965 -
Pumo3g02013 905 SUPERFAMILY RING/U-box 452 501 - -
Pumo3g02013 905 ProSiteProfiles Zinc finger PHD-type profile. 543 592 IPR019787 -
Pumo3g02013 905 ProSitePatterns Zinc finger RING-type signature. 472 481 IPR017907 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 403 442 - -
Pumo3g02013 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 516 IPR013083 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 293 321 - -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 56 350 - -
Pumo3g02013 905 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 517 593 IPR013083 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 76 96 - -
Pumo3g02013 905 CDD RING-HC_Topors 451 498 - -
Pumo3g02013 905 SMART ring_2 453 494 IPR001841 -
Pumo3g02013 905 Pfam PHD-finger 545 591 IPR019787 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 200 221 - -
Pumo3g02013 905 Coils Coil 96 161 - -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 174 189 - -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 266 289 - -
Pumo3g02013 905 SUPERFAMILY FYVE/PHD zinc finger 515 591 IPR011011 -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 105 159 - -
Pumo3g02013 905 Coils Coil 189 231 - -
Pumo3g02013 905 MobiDBLite consensus disorder prediction 406 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02013 Pumo-Chr3 31340464 31344598 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02013 451 498 C3H Transcription Factor Family AT2G39100 41.667 1.60e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo3g02013 PHD 4.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02013 - - gmx:100791422 1165.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02013 3 31340464 31344598 Pumo3g02013 3 31340464 31344598 ECH