Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02005 ATGTCGTCTGAGCCGCTGCTTCCACCGTCGGAAGCATTGTCAGAATCTCAGCACCACTCCTGGCGATGCGGCGAAGCGGCGTGGATTTTCGAAGAGTTGCCGACGGCCACCATCGTTTCTGTGTCGAGACCGGATACCGGAGACATTAGCCCAATCCTCCTTTCTTATACCATCGAGTTGCAGTACAAACAGTTCAAGTGGCGTCTAGTGAAGAAGGCATCACAACTTCTCTATTTACAGTTCTGTTTGCGGAAACGTGCATTAATTGAAGATATTCATGACAAGCAAGAGCAGTTAAAAGAATGGCTTCACAACTTAGGAATAGTAGATCACACGGTAATGGTGCCAGATGACGAAGAACCTGATGATGGAGCTGTGCCTTTACATCATGAAGACAGTGTTAAAAACAGATATGTTCCATCTGTTGCTGCTCTATCAATAATTCGTCCATCAATAGGAGGGCAGCAGTCAATTGCAGATAAAGCCAAAGTTGCAATGCAGGGTTATTTGAATCGGTTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCTAAGCTATCCTTTTTACAGGAGTATGGTCCAAAACTGAAAGAGGGATATGTAATGGTGAAGCATTTGTCAAATATTTCACAGGATTCAGATGTATCATGCTTCCCATGCAATTGGTTTCATTGTTGTAATAACAGCTGGAAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGCCTTCCTGGATGATCCCTTCAACAGCAAACCACTGGATATAATTATTTTTGATATCCTCCCTTCCTCAAATGGAGATGGAGGGACCAAAATATCTTTAGCTGATCCTATAAAAGAACGCAATCCTTTGCGTTACACATTCAAGGTTACTAGTGGAAATAGGAGCATATTGTTGAGAACTACCAGCAGTGCTAAAGTAAAAGCTTGGGTTACTGCAATTAATGAAGCTAGTCTAAGACCTCTTGAGGGCTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAGGCAGCATTTGAAGCAATTGCTACTTCAATTCAAGATGCAAAGTCAGAGATCTTCATTACGGGTTGGTGGCTGTGCCCAGAGCTATATCTGAGACGGCCTTTTGATAGTTTTTCTACCTCTCGGTTAGATTCATTACTAGAAGAAAAGGCTAAGCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTTTCTCTAGCTTTAAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCTGATCATTTTGTTGCTCGTGTGTATTTATGGTCGCACCATGAAAAACTTGTAATTGTTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGACTGTCCTCCGGTAATATGGCCTGGAAAGGACTATTACAACCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCAAGAAGTATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCTAAGAGAACTAAAGCTCCAAATGAGCATGGAATTCCACTACTTATGCCTCACCATCACATGGTCCTCCCTCATTACATGGGAAGAAGCAAAGAGATAGACATTGATGAAAAGAAAGACAAAGACAAGTGGAAAGAAATTGACAGGCAGGATTCATTTTCCTCAGAGTCTCCAATGCAGGATATACCACTACTTTTACCTCAAGAAGCTGATGGACTAGATACTTCAAATGGAGATCATACAAATTTAAGTGAAAATTCTCCATTTTTGTCCCAAAAACTTGAGCATGAAACTTTAGTTTCAGACACCCTTTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGGGCACAACCTGTTGTCGATGCTCTAGATGATTGGTGGGAAACACCAGAAGAAACCAATGATGACACTACTTTGGAATATGGACAAGTTGGTCCACGTACTACCTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAAAAAGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAGGGGATGACATAATACTGAACCGTGTTTTGGAAGCACTATACAGGCGTATTTTGCAAGCCCACAAAGATCAGCAAGATTTTAGAGTTATAATTGTGATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAAGCACTCCATATTATACAATCTTGAAGCTATACTTGGTCCTAAGACACATGATTATATTTCTTTCTATGGTCTACGATCTCATGGTACACTTTATGAAAATGGCCCTGTGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGACCGTGTAGCTTTTATTGGATCATCTAATATAAATGACCGTAGTTTGCTTGGATTAAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAATATGTTGAATCATTGATGAATGGAAAACCATGGAAGGCTGGGAAATTTTCCTATAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATGCCGGAGAGATCAGTAAAATCAGTGATCCGGTGGCAGATACAACCTACAAGGACTTGTGGGCAGCAACTGCAAAGGAAAATACTAGGATATACCATGAGGTCTTTGCTTGCATTCCCAACGATCAGATACACTCAAGAGCTGCACTTCGGCAAAGCATGGTTCAGTGGAAGGAAAAACTTGGTCATACGACCATAGATATGGGAATAGCCCCTGATAAGTTGGTGTGTCATGATGAGAATGGAGAAATCAAAACAATAGAGCCGATAGATAGGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCTTTGGAGTTCATGCGTGAGGAAGATCTAAGACCAGCTGTTATTGAGAGCGAGTTTTATGTTGCTCCTCAAGTATATCATTAA 3225 0.4198 MSSEPLLPPSEALSESQHHSWRCGEAAWIFEELPTATIVSVSRPDTGDISPILLSYTIELQYKQFKWRLVKKASQLLYLQFCLRKRALIEDIHDKQEQLKEWLHNLGIVDHTVMVPDDEEPDDGAVPLHHEDSVKNRYVPSVAALSIIRPSIGGQQSIADKAKVAMQGYLNRFLGNLDIVNSQEVCRFLEVSKLSFLQEYGPKLKEGYVMVKHLSNISQDSDVSCFPCNWFHCCNNSWKKVWAVLKPGFLAFLDDPFNSKPLDIIIFDILPSSNGDGGTKISLADPIKERNPLRYTFKVTSGNRSILLRTTSSAKVKAWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAIATSIQDAKSEIFITGWWLCPELYLRRPFDSFSTSRLDSLLEEKAKQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHENVRVLRYPDHFVARVYLWSHHEKLVIVDYKICYIGGLDLCFGRYDTPEHKVGDCPPVIWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHGIPLLMPHHHMVLPHYMGRSKEIDIDEKKDKDKWKEIDRQDSFSSESPMQDIPLLLPQEADGLDTSNGDHTNLSENSPFLSQKLEHETLVSDTLFQDEVVPLNLGAQPVVDALDDWWETPEETNDDTTLEYGQVGPRTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAGDDIILNRVLEALYRRILQAHKDQQDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILYNLEAILGPKTHDYISFYGLRSHGTLYENGPVATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSYSLRCSLWSEHLGLHAGEISKISDPVADTTYKDLWAATAKENTRIYHEVFACIPNDQIHSRAALRQSMVQWKEKLGHTTIDMGIAPDKLVCHDENGEIKTIEPIDRLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQVYH 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02005 1074 Coils Coil 85 105 - -
Pumo3g02005 1074 Gene3D - 203 329 IPR011993 -
Pumo3g02005 1074 FunFam Phospholipase 701 923 - -
Pumo3g02005 1074 Gene3D Endonuclease Chain A 693 932 - -
Pumo3g02005 1074 SUPERFAMILY Phospholipase D/nuclease 707 919 - -
Pumo3g02005 1074 Pfam PLD-like domain 742 916 IPR025202 -
Pumo3g02005 1074 Pfam PH domain 205 327 IPR001849 -
Pumo3g02005 1074 SUPERFAMILY PH domain-like 235 333 - -
Pumo3g02005 1074 Gene3D Endonuclease Chain A 349 586 - -
Pumo3g02005 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 869 896 IPR001736 GO:0003824
Pumo3g02005 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 463 490 IPR001736 GO:0003824
Pumo3g02005 1074 SMART pld_4 463 490 IPR001736 GO:0003824
Pumo3g02005 1074 SMART pld_4 869 896 IPR001736 GO:0003824
Pumo3g02005 1074 CDD PLDc_vPLD1_2_yPLD_like_1 356 501 - -
Pumo3g02005 1074 ProSiteProfiles PH domain profile. 202 328 IPR001849 -
Pumo3g02005 1074 SUPERFAMILY Phospholipase D/nuclease 317 583 - -
Pumo3g02005 1074 PIRSF PLD_euk 583 1074 IPR016555 GO:0004630|GO:0006654|GO:0048017
Pumo3g02005 1074 PIRSF PLD_euk 33 597 IPR016555 GO:0004630|GO:0006654|GO:0048017
Pumo3g02005 1074 Pfam Phospholipase D Active site motif 463 490 IPR001736 GO:0003824
Pumo3g02005 1074 CDD PH_PLD 180 326 - -
Pumo3g02005 1074 SMART PH_update 203 330 IPR001849 -
Pumo3g02005 1074 PANTHER PHOSPHOLIPASE D 161 1058 IPR015679 -
Pumo3g02005 1074 CDD PLDc_vPLD1_2_yPLD_like_2 729 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02005 Pumo-Chr3 31202911 31213405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02005 29 1074 Phospholipase D Gene Family (Wang group) AT3G05630 66.667 0.0 1419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02005 K01115 - gmx:100796914 2088.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02005 3 31202911 31213405 Pumo3g02005 3 31202911 31213405 ECH