Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02000 ATGAGGAGCGTGTTAACGAGCACCATGCACATGAGTAGCAATGCCCTTGCCATCATCTCAGAGCTTGATAAAACTGTCGCGGATATGAACGTGACAACAGATCATGGGCATCGCCAGCTTGTTGAGGATTCTGGGGATGAACATGTTTTTGGTCGCGACGAGGTTATTCCCTCGTGGGTTGAGGATGATGGTGCTGGTGTCCGTAGACTCCTTCATGAAAGTCACAAAGTCAAGCCTAATGTGGTTGTGGCCAAAGATGGTAGTGGAAAGTACAAGAGCATCAACCAGGCATTGAAGAAGGTGCCAAAGAAGAACCAAAAGCCATTCGTGATTTACATCAAGGAAGGTGTTTACCATGAGTATGTTGAAGTCACTAAGAAAATGACTCACGTGGTGTTTGTGGGTGATGGTGGCAAAAAGACACGAATAACTGGCAACAAAAACTTTGTAGATGGAGTTAATACTTACAGAACCGCCTCTGTTGCTATTCAAGGAGATTATTTTGTGGCTATCAATATTGGGTTTGAGAACTCTGCTGGCCCCCAAAAACATCAAGCAGTAGCCATAAGGGTCCAAGCAGACAAGTCTATCTTCTATAAATGCTCAATGGATGGGTATCAGGACACATTGTATGCTCATGCCATGCGTCAATTCTATCGGGATTGCACCATTTCAGGCACCATAGACTTCGTCTTTGGTGATGCAGTGGCTGTTTTCCAGAACTGCACTTTTGTGGTCAGAAAGGCGATGGAAAACCAACAATGCATTGTGACAGCACAAGGTAGAAAAGAGAGGCACCAACCATCAGGAACAGTGATCCAAGGGAGCTCCATTGTGTCAGATCACACAGTGAAGTTAGATAACAAGGCTTACCTAGCGCGTCCATGGAAGAATCACTCAAGGACCATATTCATGGACACTTACATTGGGGATTTGATTCAACCCGAAGGGTATATGCCATGGCAAGGACCAACTGGTCTTTCAGGCATGGACAGTTGTTTCTATGCCGAGTACAATAACACTGGTCCTGGCTCAAACAAATCCAAGCGTGTAAAATGGCGCGGGATCATGACCCTCACTTCCCAATCCGTGAGCCATTACTTACCTTACAAATTTTTTCATGGAGATGATTGGATTAAAGTTACAAGGATTCCTTACTCCAATGCTGTCACCGCCCCCAAGCACTAA 1188 0.452 MRSVLTSTMHMSSNALAIISELDKTVADMNVTTDHGHRQLVEDSGDEHVFGRDEVIPSWVEDDGAGVRRLLHESHKVKPNVVVAKDGSGKYKSINQALKKVPKKNQKPFVIYIKEGVYHEYVEVTKKMTHVVFVGDGGKKTRITGNKNFVDGVNTYRTASVAIQGDYFVAINIGFENSAGPQKHQAVAIRVQADKSIFYKCSMDGYQDTLYAHAMRQFYRDCTISGTIDFVFGDAVAVFQNCTFVVRKAMENQQCIVTAQGRKERHQPSGTVIQGSSIVSDHTVKLDNKAYLARPWKNHSRTIFMDTYIGDLIQPEGYMPWQGPTGLSGMDSCFYAEYNNTGPGSNKSKRVKWRGIMTLTSQSVSHYLPYKFFHGDDWIKVTRIPYSNAVTAPKH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02000 395 ProSitePatterns Pectinesterase signature 2. 224 233 IPR033131 -
Pumo3g02000 395 Gene3D - 74 390 IPR012334 -
Pumo3g02000 395 PANTHER PECTINESTERASE 5 380 - -
Pumo3g02000 395 SUPERFAMILY Pectin lyase-like 77 387 IPR011050 -
Pumo3g02000 395 Pfam Pectinesterase 80 376 IPR000070 GO:0030599|GO:0042545
Pumo3g02000 395 FunFam Pectinesterase 74 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02000 Pumo-Chr3 31156714 31158078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02000 1 392 Carbohydrate Esterase AT3G05610 51.256 2.16e-145 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02000 K01051 - gmx:100794799 729.554