Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01999 ATGAAAGCAAAAGGAGTAAAAAACCCTAGTTTCCTTTCCTTGCTATCTCATAAATCGCAGGTGCAGCAGCAGAGAGTGCGTAATTTGAATCTTTACCGCTTCCTTGTTCGGAGAACTGGCAGCAACTTCAATGCTGTTATACTCAAGCGTTTGTTCATGAGCAAGGTTAACAAGCCCCCATTGTCTTTGTCAAGGCTGATTAAGTATACCAAGGGGAAGGAAGATAAGATTGCTGTTGTGGTGGGGACTATAACTGACGATATTCGTGTTTATGAAGTTCCACCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACTGCTCGTGCAAGAATCGAGAAAGCAGGTGGTGAATGCTTGACTTTTGATCAGTTGGCTCTCAGGGCTCCTCTGGGACAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTGCCTCACAGCCACACCAAGCCTTATGTTCGAGCAAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAACAGCCGAGGTTTTAGGGTTTGA 561 0.467 MKAKGVKNPSFLSLLSHKSQVQQQRVRNLNLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTKGKEDKIAVVVGTITDDIRVYEVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRAKGRKFERARGRRNSRGFRV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01999 186 SUPERFAMILY Ribosomal proteins L15p and L18e 28 138 IPR036227 -
Pumo3g01999 186 FunFam 60S ribosomal protein L18 14 186 - -
Pumo3g01999 186 Pfam Ribosomal protein 60S L18 and 50S L18e 29 186 IPR021131 -
Pumo3g01999 186 Gene3D - 16 186 - -
Pumo3g01999 186 PANTHER 60S RIBOSOMAL PROTEIN L18 29 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01999 Pumo-Chr3 31146497 31148662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01999 33 186 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.065 1.46e-85 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01999 K02883 - gmx:100791657 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01999 3 31146497 31148662 Pumo3g01999 3 31146497 31148662 ECH
Pumo5g03627 5 85889600 85891562 Pumo3g01999 3 31146497 31148662 PCT