Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01997 ATGAGTCGAGGAAGTGCAACTGCTGCGAAGGGCAAGAAGAAGGGGGCGACATTCACCATTGACTGCGCGAAGCCAGTGGAGGACAAGATCATGGACATTGCGTCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTCGGTGGCAAGGCCGGTGCTCTCGGCGACACCGTCACCGTCGCACGTGAGAAGACCAAAATCATTGTTACTTCCGACAGCAACTTCTCCAAACGGTACCTTAAGTACTTGACTAAGAAGTACTTGAAGAAGCACAATGTACGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAGCGTTTATGAATTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAA 375 0.4773 MSRGSATAAKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDTVTVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01997 124 Gene3D - 5 124 IPR038526 -
Pumo3g01997 124 Pfam Ribosomal L22e protein family 14 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Pumo3g01997 124 PANTHER 60S RIBOSOMAL PROTEIN L22 2 124 IPR002671 GO:0003735|GO:0005840|GO:0006412
Pumo3g01997 124 FunFam 60S ribosomal protein L22-2 5 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01997 Pumo-Chr3 31105658 31106902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01997 1 124 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 84.677 2.07e-66 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01997 K02891 - gmx:100499952 223.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01997 3 31105658 31106902 Pumo3g01997 3 31105658 31106902 ECH
Pumo5g03630 5 85963831 85965249 Pumo3g01997 3 31105658 31106902 ECH
Pumo3g01997 3 31105658 31106902 Pumo5g03630 5 85963831 85965249 ECH
Pumo3g01997 3 31105658 31106902 Pumo3g02237 3 34241302 34243454 ECH
Pumo5g03630 5 85963831 85965249 Pumo3g01997 3 31105658 31106902 PCT