LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01988	ATGGGTTGTGGTTCTGAGCATTTTACCATGATCTTCATCATCACCCTCTTGATGCTCCTATCATCACAAAGCTTCCACATTTTGACTGTGGCTGGTTCTCTATTCAATGCAGTGGGAAGCTTCCAGGTTCATGGCCTACCAGAGATGTATTTCATTGAAGAGAATGATGAAAAGCAGGTTAAGAAAATCTCAGGAATAGATGAGAATGAAGAGAAGCAAGCTTTGATAGTGGAAAAGTTTAGATCCTTGCTTGGACTCAAGAGTTTCCACACCAAAGTACCATTCAATGGTGATTTGGAGTATCTCTCTCCCTCACCTTCTCCATCACCCTTCAGTGAAGAAGCTCAGGCTCCAGCTCCTTCTCCTTCTCCTCTTCCACACGTGCAACATCATTCCCATCATCCACCGCATCATAAGAATCCACCACTTCACCAAACTCATCATGAAGATAGAGGCAGGGCAAAGAGAATACTAATAGCTGTTCTTGTATCTGCTGGGGTTGCTACATTGATTGGTGCTTGTGGGTTATTCTTGGTGTGGAGGAAATTCTCAAATCACACAAAGAAACCCGAAAGGACAATGACACCATATAGCAAGAGCAAGGGAAGTGGAGGTGCTTATCAAAGTTCATCAAGCAAGGTGAGTTTAAACTCAGGACTAGATCTGTTTTATCTTAATGCTTTAGGTGAGGACATAGAGCAACACTCTTGCAGCTTGAAAAAGACACGCAAGGATGGTTTAGAATATGATAATGTTAGCGGTTCTTCCACAAAGGAAATTGCATCTGTTCATGAAGATGCAGAATCAGTGGAAGGTGAAGCTGAAGTTGAATCTGATGGCGGCAACTCTTCTTCTGGGGATAAAATTATCCCTGAAGATTGCCATTCATCAGACAATGAAAGTTTTCATTCCTTTGTTGATGATTCACACTCAAACAATAGACTCTCCACTGCTTCAGCTGGTAGTCTTAGTGACACAAACTCTCTGTCCCGTCAAAATTCAACTTCATTACCAAACCAATTTCCTAGTTCTCCACATAACTCAATGTCAAATATACAACCTCACCAATCACCAAATAGTGCAAAAAACCATGAAGAGCAAGAGATTGAGAGCACTGTCCAATGTCCAAAAACAATCACTTCCCCTCCACCTCCTCCTCCTCCACCACCACCACCACCATTGCGAATGCCATTATTTACTTTGCATTCTCTCACTTCTTCATCTAGACTCTCCTCTCATTCCCCACTTTCTTTGACATCTAATAATTTATCATCTCCGGTAAATTCAGACACTTTCTCAGGTTCAAATCAAAGTCCAGAAAAGGAGTTGCCTTCTCCACATGGACCTTACCCTACTCAATCTCCTCCTAACATTCCCCCACCACCATGCCCACCTCCATTTCTTAAAGGCAATAGTAACAGTGCCAAAACTCCACCTCCTCCACCTTCTCAACTCCCTCAATTTACCCCACTTGGTAAAGATGGTGCACCATTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCTGCACCAAACCGCACAATGGTTTGGGATAAACTTCGATCAAGCTCATTCGAGTTGGATGAGGAAATGATCGAGTCTCTATTTGGTTACAATTTGCAAAATTCAATTAAGAATGACGAAACAAAGAGTAAAACCCCGTCTCCAAGCAAGCATGTACTTGAGCCAAAACGCCTGCAGAACATAACAATACTCTCAAAAGCTCTGAATGCGACAGCTGAGCATGTCTGCGAGGCCTTAATGCAAGGTAAAGGGTTGTCTTTGCCCCAACTAGAGGCACTAGTGAAAATGGTACCCACCAAGGAGGAAGAGTCCAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAGGTTCGTGAGGGCAATGCTTGATGTGCCATTTGCCTTTCAAAGGGTAGAAGGCATGCTTTTCAGAGAGACATTTGATGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGGAAGCTTGCAAGGAACTAAGATCAAGCAGGCTCTTCTTGAAGTTACTAGAAGCAGTGCTCAAAACGGGAAACCGTATGAACGTTGGAACAATAAGAGGAGGTGCTAGAGCATTCAAACTCGATGCCCTTCTCAAGCTTGCAGATGTTAAGGGAACTGATGGGAAAACCACGTTGCTCCATTTTGTTGTTCAGGAGATCGTTCGTTCGGAAGGAATAAGAGTTTCAGACAGCATTATGGGGAAAATCAGCCAAAGAAGTAAGAACAGAACGGAGGAAGAGAAGGAAGAAAATTACAAAAGGATGGGACTAGAACTTGTTTCTGGTCTCAGCACTGAGTTATACAATGTGAAAAAAACAGCTACGATTGACTTGGATGTTCTTGCAAGCTCTGTGTCGAACTTATCAGAAGGAATGAATAAGCTGCAACATCTAGTGGAGAAGGAGTTGCATAAAGATGAAAGGAGTGTGAACTTTGTGCAGTGTATGAAGTCATTCCTTAACTATGCTGATGGAAACTTGAAGGAGTTGCGAGGAGATGAAGATAGAGTGTTGGCACGTGTGAAAGAAATTACGGAGTATTTTCATGGGGATGTGAGCAAAGAAGATGCAAACCCACTTAGGATATTTGTGATTGTGAGAGATTTTCTGGGGATGTTAGATAATGTGTGTAAAGAACTTAGAAGGTCTAAAGCTCCACGTAGCCCGAACCCTCTTGCTATGCTCCCTTTAGATAGATCATAG	2751	0.4264	MGCGSEHFTMIFIITLLMLLSSQSFHILTVAGSLFNAVGSFQVHGLPEMYFIEENDEKQVKKISGIDENEEKQALIVEKFRSLLGLKSFHTKVPFNGDLEYLSPSPSPSPFSEEAQAPAPSPSPLPHVQHHSHHPPHHKNPPLHQTHHEDRGRAKRILIAVLVSAGVATLIGACGLFLVWRKFSNHTKKPERTMTPYSKSKGSGGAYQSSSSKVSLNSGLDLFYLNALGEDIEQHSCSLKKTRKDGLEYDNVSGSSTKEIASVHEDAESVEGEAEVESDGGNSSSGDKIIPEDCHSSDNESFHSFVDDSHSNNRLSTASAGSLSDTNSLSRQNSTSLPNQFPSSPHNSMSNIQPHQSPNSAKNHEEQEIESTVQCPKTITSPPPPPPPPPPPPLRMPLFTLHSLTSSSRLSSHSPLSLTSNNLSSPVNSDTFSGSNQSPEKELPSPHGPYPTQSPPNIPPPPCPPPFLKGNSNSAKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDETKSKTPSPSKHVLEPKRLQNITILSKALNATAEHVCEALMQGKGLSLPQLEALVKMVPTKEEESKLFNYKGDINELGSAERFVRAMLDVPFAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQRSKNRTEEEKEENYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMNKLQHLVEKELHKDERSVNFVQCMKSFLNYADGNLKELRGDEDRVLARVKEITEYFHGDVSKEDANPLRIFVIVRDFLGMLDNVCKELRRSKAPRSPNPLAMLPLDRS	916

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	444	468	-	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	248	502	-	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	196	211	-	-
	Pumo3g01988	916	PANTHER	FORMIN-RELATED	411	903	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pumo3g01988	916	Gene3D	Formin, FH2 domain	514	905	IPR042201	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	104	151	-	-
	Pumo3g01988	916	SMART	it6_source	491	904	IPR015425	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	189	211	-	-
	Pumo3g01988	916	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	491	915	IPR015425	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	111	125	-	-
	Pumo3g01988	916	Pfam	Formin Homology 2 Domain	495	889	IPR015425	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	291	307	-	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	400	442	-	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	378	397	-	-
	Pumo3g01988	916	MobiDBLite	consensus disorder prediction	308	360	-	-
	Pumo3g01988	916	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	504	900	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01988	Pumo-Chr3	31010973	31014840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01988	476	909	FH2 protein (formin) Gene Family	AT3G05470	75.057	0.0	663

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01988	-		-	gmx:100811929	1449.88