Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01987 ATGGATTGCAACAACACATGTTCGGACCAAGTCATCGCAGAAATGATTGAAATGGGTTTTGATTATTCCGATATTGTGGAAGCCATAAAAGTAGTGGGTCCGTCTATTCCCAGCGCTGTGGAGCATATCCTCAATAACATTACCACTGCCCCAGAAGCATCCACTACCCACACCTCCAAATTGCATGCACACAATGGGAATACTCTCAGAAAACAACCTTTGCGCACGTGCCGTCAAGCTCGACAGTCCAAGATATTCGACCATTTCCACTCCAATGATGTCAAGGAACACAAGGAGGAATCCCCTCAAATGGGAATTGATCCCAATCCAATTGTGCTTTCAGAGCCATTTGAAGCTCAAGATTTGGATGTTGCATCTGATTGGGAGCATAGAGTTAGCCATCTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCCTTTCTGCTTGGGTTTCTCATAAAGACTGTCTTGTCCTCGCTGCAACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCTGCATTGTTATCTGGGAAAGTGGTGGTTGTGATTTCACCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTAACAAGACATGGAATCAGTGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAACAGAAAGCAATGAGGGGCTTGTATAGTATAGTGTATATTTGCCCGGAGACTGTATTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTCGCAATTGATGAGGTACATTGCGTTTCTAAATGGGGTCATGATTTCCGTCCAGATTACAGGCGACTGTCTGTGCTGAGGGAAAATTTCAGTACTAGCAAGCTAAAATCCCTGAAATTTGATATACCTCTGATGGCCTTGACAGCTACAGCTACAAAAAGAGTTCGAGAAGACATTTTAAAATCATTACACATGTCAAAAGAAACGAATGTTGTTCTTACATCATTTTTTCGATCTAATTTACGCTTCATGGTAAAGCATAGTCGAACATCACAGGCTTCTTATGCGAAAGATTTTCATGAATTGATTCAAGTATATGGTAGAAAGCAAAAAATTGATGGAAATGAAAAGGATTTCTACACAGATGATTCAGATCATGTTTCTAATAGCTCCGATGCTAGTAGTATCTCTGATACAGACAGTGTTTCACCTGATGACGTGGATGACAACCAAGATGATTATGCTTATAGAGATATCAATATAATGCACTCTGGAAATACAGACGGTTTTTTAACGGGAAGAGAATTGTCAGTTGAGTTCCTGGAAAATGATATTGATGTCTTTCAAAGTGTGGATAACTCAGATGTTACCCATGGTGAATTTTGTGTACAACCTCCTCACAAGGAACAGGAATTATCTGAGACAATTGATCCACCGACGAAACCAGAAGGAAGACTTAAAATTCTTAAAGAGCCTTTGGAACAAGGACCAGCAATCATATATGTACCCACCAGAAAAGAAACTCTGAGAATTGCAAAGTATCTATGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCAGGGCTTCCCAAATTGCATCTAAGAAGGGTTCATAAAGAGTTTCATGAAAACACTCTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTAGAAGCATACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTAGCAGATTGCATTCTGTATGCAAACCAAGCAAGCAAGCCATCACTTTTGCCTAGTCGGAAAAGTGAAGATCAGATAAAACAAGCATATATCATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGCCGAGCAAAGACACTCGTTGAATACTTTGGAGAGGATTTCAGTCATCAGAAATGTCTCTTATGTGATGTTTGCATTAATGGTCCACCTCAAAGGCAGAATGTAAAAGAGGAGGCCTGTATTTTACTGCAAACAATAGGTGCCCTTAATGGATGTAGGGATTCCATGGATTGCTCATATGATGATGATATACATTTTGACTCCAAACATAGAGGACTAAGAGAGAGGCCAAATCTTAAGATGTTGGTTGGAAAAATTAGGCAGCAGTTTCAGAAGTATTTAACCACTGATATGTTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCCGGGAAGGAGATGACAAGACCCACGTTCAGGCAAAATACCCGGAGCCAACAGAATTAGGATTGGAATTTGTGAAGTCCATGAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTACTTGCTAGGAAAATTAACAAACCATTTTCCTCATTCTCGGAATGGGGAAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTGGAAAGAATGCGAGCCAATAGAAAGCCAGGGATGCTGCCATGTCCCAAAAAGCAACGGAAGAGAAAAGCTAGAAAAGTACAACCTGATTTGAGGACTTCTCGTGGTAGACTATCAGCAAAACTCTCAAAATATAAGTGA 2598 0.4092 MDCNNTCSDQVIAEMIEMGFDYSDIVEAIKVVGPSIPSAVEHILNNITTAPEASTTHTSKLHAHNGNTLRKQPLRTCRQARQSKIFDHFHSNDVKEHKEESPQMGIDPNPIVLSEPFEAQDLDVASDWEHRVSHLMKKHFGFSSLKSFQKEALSAWVSHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLHMSKETNVVLTSFFRSNLRFMVKHSRTSQASYAKDFHELIQVYGRKQKIDGNEKDFYTDDSDHVSNSSDASSISDTDSVSPDDVDDNQDDYAYRDINIMHSGNTDGFLTGRELSVEFLENDIDVFQSVDNSDVTHGEFCVQPPHKEQELSETIDPPTKPEGRLKILKEPLEQGPAIIYVPTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRRVHKEFHENTLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILYANQASKPSLLPSRKSEDQIKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEDFSHQKCLLCDVCINGPPQRQNVKEEACILLQTIGALNGCRDSMDCSYDDDIHFDSKHRGLRERPNLKMLVGKIRQQFQKYLTTDMLWWRGLARILEVKGYIREGDDKTHVQAKYPEPTELGLEFVKSMSEQAFYVYPEADMLLARKINKPFSSFSEWGKGWADPEIRRQRLERMRANRKPGMLPCPKKQRKRKARKVQPDLRTSRGRLSAKLSKYK 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01987 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 204 IPR027417 -
Pumo3g01987 865 Gene3D - 114 337 IPR027417 -
Pumo3g01987 865 FunFam ATP-dependent DNA helicase 471 599 - -
Pumo3g01987 865 MobiDBLite consensus disorder prediction 377 412 - -
Pumo3g01987 865 MobiDBLite consensus disorder prediction 823 865 - -
Pumo3g01987 865 FunFam ATP-dependent DNA helicase 601 779 - -
Pumo3g01987 865 Pfam Helicase conserved C-terminal domain 486 589 IPR001650 -
Pumo3g01987 865 MobiDBLite consensus disorder prediction 833 847 - -
Pumo3g01987 865 Pfam DEAD/DEAH box helicase 148 315 IPR011545 GO:0003676|GO:0005524
Pumo3g01987 865 CDD DEXHc_RecQ 134 336 - -
Pumo3g01987 865 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 6 46 IPR015940 -
Pumo3g01987 865 Pfam RecQ zinc-binding 612 661 IPR032284 -
Pumo3g01987 865 Gene3D - 603 782 IPR036388 -
Pumo3g01987 865 SMART helicmild6 509 590 IPR001650 -
Pumo3g01987 865 SMART ultradead3 141 346 IPR014001 -
Pumo3g01987 865 MobiDBLite consensus disorder prediction 386 401 - -
Pumo3g01987 865 Gene3D - 472 599 IPR027417 -
Pumo3g01987 865 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 643 IPR001650 -
Pumo3g01987 865 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 329 IPR014001 -
Pumo3g01987 865 NCBIfam RecQ family ATP-dependent DNA helicase 135 364 IPR004589 GO:0004386|GO:0006310
Pumo3g01987 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 602 IPR027417 -
Pumo3g01987 865 PANTHER DNA HELICASE RECQ FAMILY MEMBER 125 753 - -
Pumo3g01987 865 SUPERFAMILY UBA-like 7 52 IPR009060 GO:0005515
Pumo3g01987 865 FunFam ATP-dependent DNA helicase 114 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01987 Pumo-Chr3 31001414 31008311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01987 485 608 Eukaryotic Initiation Factors Gene Family AT5G11170 27.419 2.12e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01987 K10900 - gmx:100793222 1478