LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g01981	ATGGCGGAAACGCGCGAAACCACACCTAAAGAAACCGTTCGCGAAGAAGAAGAAGAGGACCAAAGTTTCGAAGAGCTCGGCGTGGACGCTCGTCTCCTTCGAGCCATGCTCAAGAAGGGAATCGAGAAACCTACTCCAATTCAGCGCGTCGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCGGGAAAGACCTTAGCGTACCTTCTCCCGTTGCTTCAGAAACTGTTCACCGCTAATGCTGATCGGAAGAAGCTCGCGCCTAATGCTTTTGTTCTTGTCCCTACTCGCGAACTGTCTCAACAGGTGTATGCGGAAGTGTTGTCGCTGGTTGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGTTGAATAGCAACATGCTTGCTAATGACTTGCGGGCAGCATTGGCTGGACCTCCTGATATTTTGGTCTCCACTCCTGCATGCATAGCGAAGTGTTTGTCCAGTGGCATACTTCAGGCGGCATCCATTAATGCATCGCTTGAAACTCTTGTTCTTGATGAGGCAGATCTTCTATTATCATATGGGTATGAAAATGATATAAAAGCCTTTACACCTCACGTACCCAGAAGTTGCCAGTGTCTTCTCATGTCTGCAACATCAAGTGCGGATGTGGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTCTGCCTGAAGTGGGAAATCATAAGGATGAGGTCATTCCTAAAAATGTTCAGCAATTCTGGATCTCATGTCCTACTAGTGATAAGTTACTTTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAAAAAGTTCTGATATTCACGAATACCATAGACATGAGTTTCAGATTGAAACTATTCTTGGAAAAGTTTGGAATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCTCGCCTCCATATTCTTGAGGAATTCAATGCGGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTTGCATCACGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGTGCTTCTGTCTCTCTGGTTTCTCCGGATGAGATGGATACTTTAGAAGAAATAAGATATTTTGTTGGGGATGATGAAAACAAAGGCACAAAATCCATTGCCGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTACAGGGCTGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCAACACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATGTCCCGCCTCCGCACCTACGTGATGTGCCTGAGTACCTTTTAGACAAACCAACGAAAGAGGCAAGGGAAATGGTTAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGCCGCAAGGGATCCAAGAGAAAATTAAGAAAAGATGGAGACCCTCTAATGGCTATGGCATCAAGAAGACCGCACAAAGCTAGGAAGACTGGTGGAAGCGATAGCAACAATAGCAGTGATAGACATAAACGCAAACAGAATAAGGGTATTTGA	1791	0.4327	MAETRETTPKETVREEEEEDQSFEELGVDARLLRAMLKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANADRKKLAPNAFVLVPTRELSQQVYAEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILVSTPACIAKCLSSGILQAASINASLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNHKDEVIPKNVQQFWISCPTSDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVASRKSRKHAKIKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNSGASVSLVSPDEMDTLEEIRYFVGDDENKGTKSIAEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFNTNPRDLDLLKHDKVLSKNVPPPHLRDVPEYLLDKPTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLMAMASRRPHKARKTGGSDSNNSSDRHKRKQNKGI	596

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g01981	596	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	18	234	IPR027417	-
	Pumo3g01981	596	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	21	49	IPR014014	GO:0003724
	Pumo3g01981	596	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	268	450	IPR001650	-
	Pumo3g01981	596	MobiDBLite	consensus disorder prediction	1	22	-	-
	Pumo3g01981	596	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	52	233	IPR014001	-
	Pumo3g01981	596	PANTHER	RNA HELICASE	13	531	-	-
	Pumo3g01981	596	CDD	DEADc_DDX56	28	235	-	-
	Pumo3g01981	596	SMART	helicmild6	290	404	IPR001650	-
	Pumo3g01981	596	SMART	ultradead3	40	253	IPR014001	-
	Pumo3g01981	596	Pfam	DEAD/DEAH box helicase	45	222	IPR011545	GO:0003676\|GO:0005524
	Pumo3g01981	596	Pfam	Helicase conserved C-terminal domain	261	404	IPR001650	-
	Pumo3g01981	596	Gene3D	-	237	443	IPR027417	-
	Pumo3g01981	596	Gene3D	-	2	235	IPR027417	-
	Pumo3g01981	596	MobiDBLite	consensus disorder prediction	1	16	-	-
	Pumo3g01981	596	MobiDBLite	consensus disorder prediction	538	596	-	-
	Pumo3g01981	596	MobiDBLite	consensus disorder prediction	555	590	-	-
	Pumo3g01981	596	CDD	SF2_C_DEAD	250	413	-	-
	Pumo3g01981	596	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	247	429	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g01981	Pumo-Chr3	30958889	30965717	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g01981	22	427	Eukaryotic Initiation Factors Gene Family	AT3G19760	25.616	7.50e-37	140

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g01981	K14810		-	gmx:100800749	1064.68