Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01979 ATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAGCAATCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCATACTTCAACTACAACAACAAATAATAGCAATGGTTCCAACACAAATTCACAGCCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAGGTTATTGCTCTATCACCAACCACACTAATGGCCACAAACAGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAGAGAGACCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACAGAAATTAGAAAGAGGGTTTACGTGTGTCCAGAACCCTCGTGCGTCCACCACAACCCAGCAAGAGCACTCGGTGATCTCACTGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGCTTCATTACACACAGAGCTTTCTGTGACGCACTGGCTGAGGAGAACAACAAAGCCAACGAAGGAGTACAATTGCCAAAGATACCAAACTTGCAATGCCAACAAATCCCAAACCTGCAGGTTTCATCTCTACCAATCAACACCAACATTGTTCCCAACCCACAGATGGGTGGCACCTCGGATCAGTTCAACCATGCTGATCACAAGCACAAACTATCACTCCCACACGAGCTCATGCCAATGCCTGCACCAAAACCCTTCAACAACAACACCAACATGGCCGCAGGAGCAGTGTTCACTAGAAGCCTCTCATCAACTTCCTCTCCCTCTCTTCAACTAAGCTCAAACATGTTCGAGGAAAACGGGCTCCACTTGGCTGCAGGGTCACCACACATGTCAGCCACGGCGTTGCTGCAAAAAGCTGCACAAATGGGAGCAACAGTGACAGAAAAAACCTTTGCAACAAACATGGCACCACCGTCGTTTGGCGTGCTGCAACAACATCAACAGCCAAATGGACAACCCTTCATGAACCAATACATGCACAGTGGCCAACAACAAGAGGTTAACATTTCCGCTCAGTATAACAATTTCGGTGCAAACGGGATGGCTGGAGGGAGCGTTGGGATGAACGGTGTGGACATGTTCAACGCTATTTTGGATCAAAGCAAGGCCTTGTCGAAGATCATAGAGCAAAATAATAGAAGCAGTAGTGGAGGACCAGCAAATGGAGGTGCGAGTAGTGCTATTAACGTTGGTGGAAGCAAAGGAAGTGGGGATGTAATGACTCTGGACTTTTTGGGAATAGGAGGAGGGGGAGGGGGAGGTGGTGGGGGTGCACATGGAAATTTCTATGGTGGTGCTCAGCAAGGGGAAACTGGTGCACCGGATGAGGTTTGGAGAAACTGGTCTAGTAAGAACGCAGGGTTTGAATCGTTTTCAGCAACGAGCAGCATTTGA 1578 0.4721 MSNITSCDSGSFSTENTREDAAVKQQSEMLGQFHSPHSHTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEIRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGVQLPKIPNLQCQQIPNLQVSSLPINTNIVPNPQMGGTSDQFNHADHKHKLSLPHELMPMPAPKPFNNNTNMAAGAVFTRSLSSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFATNMAPPSFGVLQQHQQPNGQPFMNQYMHSGQQQEVNISAQYNNFGANGMAGGSVGMNGVDMFNAILDQSKALSKIIEQNNRSSSGGPANGGASSAINVGGSKGSGDVMTLDFLGIGGGGGGGGGGAHGNFYGGAQQGETGAPDEVWRNWSSKNAGFESFSATSSI 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01979 525 MobiDBLite consensus disorder prediction 1 20 - -
Pumo3g01979 525 FunFam protein indeterminate-domain 12-like 70 138 - -
Pumo3g01979 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Pumo3g01979 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 489 IPR031140 -
Pumo3g01979 525 MobiDBLite consensus disorder prediction 28 60 - -
Pumo3g01979 525 MobiDBLite consensus disorder prediction 1 76 - -
Pumo3g01979 525 Gene3D Classic Zinc Finger 146 225 - -
Pumo3g01979 525 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Pumo3g01979 525 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Pumo3g01979 525 Gene3D Classic Zinc Finger 70 136 - -
Pumo3g01979 525 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Pumo3g01979 525 SMART c2h2final6 167 187 IPR013087 -
Pumo3g01979 525 SMART c2h2final6 132 162 IPR013087 -
Pumo3g01979 525 SMART c2h2final6 91 113 IPR013087 -
Pumo3g01979 525 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01979 Pumo-Chr3 30940739 30944913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01979 48 352 IDZ Gene Family AT3G50700 56.402 1.68e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo3g01979 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01979 - - gmx:100785295 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03650 5 86102369 86106729 Pumo3g01979 3 30940739 30944913 ECH
Pumo3g01979 3 30940739 30944913 Pumo3g01979 3 30940739 30944913 ECH
Pumo5g02794 5 74958639 74963200 Pumo3g01979 3 30940739 30944913 PCT
Pumo5g03650 5 86102369 86106729 Pumo3g01979 3 30940739 30944913 PCT