Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01973 ATGGCTGATTTTCTGACCTCTACCAACCGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGCTGAGAAATATACAGCTGCTAATCAAAGAGCCAAACAAATTCTAGAGAAGGGTGGAGCAACTCTAATGGAAGTGGATGTTGATGGGTTGTTGTCATATCCTGAACCCCAGATGACCACAAAGGACAGTGCTGAAAAGCATTCTTGGACCAAACCTCTTAGTATTGAAGAAGAACAATGTGTAAGGGTATTTTATGAAAACAAGATACAAGATGTGAAAAAATCAGTTTCCCTCATAAGATCCAGTCAATCTTTTGAAATAGTTTATGATATACAGGCAACAGCCCTTATGTATTTTAAAAGATTCTATCTGCAATGGTCGGTGATGGAACATCAACCAAAACATATAATGTTAACCTGCATATATGCTGCTTGTAAGATAGAAGAAAATCATATGTCAGCTGAGAAGCTTGGTAAGAAGACTTTACAGGATCATCAAATGATTCTCAATAATGAGATGATAAGTTTGGAATTTGACCTTATTGTTTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTGCAATGCTGGTGATGATCAGCTTCAAATGCTCAAGACTTTTCAAAAGACAGCAAGATCAGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCCTGGCTGCTTTGCGGAACTCAAATGCAGTTCATAAAGTCATTGACTTTGATAGCTATCTTATGAGCATTTTTTCCCGTCAGAATTCCATGCATACAATGTTCGTGCTTTCTGAATCACTGAATGCAATTGATTCTTTGGTTAGAAAATACAAAAGTCCTTCTATGGAAGAAAGGGAGCATCTCGACCAAAAACTGAAGTCTTGTTGGGGCCTTAGCTCTCATGATGAGGGCGAGAAGCGGGAGGAGAAATCAAAGCACAAGTCCAAAAGGAGCTCAAATGAAGCAGAAAATATGCCATTTGTTGTCTAG 1026 0.3879 MADFLTSTNRAKWIFSPQQLAEKYTAANQRAKQILEKGGATLMEVDVDGLLSYPEPQMTTKDSAEKHSWTKPLSIEEEQCVRVFYENKIQDVKKSVSLIRSSQSFEIVYDIQATALMYFKRFYLQWSVMEHQPKHIMLTCIYAACKIEENHMSAEKLGKKTLQDHQMILNNEMISLEFDLIVYAPYRSVEGFINDMEEFCNAGDDQLQMLKTFQKTARSEVDKMMLTDAPLLFPPGQLALAALRNSNAVHKVIDFDSYLMSIFSRQNSMHTMFVLSESLNAIDSLVRKYKSPSMEEREHLDQKLKSCWGLSSHDEGEKREEKSKHKSKRSSNEAENMPFVV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01973 341 MobiDBLite consensus disorder prediction 311 341 - -
Pumo3g01973 341 Gene3D - 184 288 - -
Pumo3g01973 341 Pfam Cyclin C-terminal domain 185 307 IPR031658 -
Pumo3g01973 341 MobiDBLite consensus disorder prediction 311 332 - -
Pumo3g01973 341 CDD CYCLIN_AcCycH_rpt2 183 307 - -
Pumo3g01973 341 PANTHER CYCLIN 62 331 IPR043198 GO:0006357|GO:0016538
Pumo3g01973 341 SMART cyclin_7 96 177 IPR013763 -
Pumo3g01973 341 FunFam Cyclin h 183 288 - -
Pumo3g01973 341 Pfam Cyclin, N-terminal domain 98 173 IPR006671 -
Pumo3g01973 341 Gene3D - 63 183 - -
Pumo3g01973 341 SUPERFAMILY Cyclin-like 185 310 IPR036915 -
Pumo3g01973 341 SUPERFAMILY Cyclin-like 65 182 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01973 Pumo-Chr3 30865963 30870087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g01973 1 286 Core Cell Cycle Gene Families AT5G27620 59.862 5.37e-119 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01973 K06634 - gmx:547736 525.398